View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18649_low_27 (Length: 342)

Name: NF18649_low_27
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18649_low_27
NF18649_low_27
[»] chr1 (1 HSPs)
chr1 (10-320)||(18085576-18085886)
[»] chr2 (2 HSPs)
chr2 (33-259)||(25743557-25743783)
chr2 (33-126)||(26907484-26907577)
[»] chr3 (10 HSPs)
chr3 (33-126)||(10261285-10261378)
chr3 (34-126)||(10664113-10664205)
chr3 (34-101)||(10501186-10501253)
chr3 (35-126)||(10527945-10528036)
chr3 (35-126)||(10672269-10672360)
chr3 (40-126)||(11769821-11769907)
chr3 (33-126)||(10032590-10032683)
chr3 (22-110)||(8569094-8569182)
chr3 (34-126)||(10089377-10089469)
chr3 (34-126)||(10196260-10196352)
[»] chr6 (1 HSPs)
chr6 (33-101)||(31679122-31679190)
[»] chr8 (1 HSPs)
chr8 (18-86)||(14311817-14311885)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 18085886 - 18085576
Alignment:
Q  10 attatactctccttttcaaattcataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctca 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18085886 attatattctccttttcaaattcataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtagcttaacctca 18085787  T
Q  110 aagctggaagaatattactctcatgatgttgtagatcccatatctcactgttcagtactttatgccattcttgaatatcactttttgacctcaaaagccc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  18085786 aagctggaagaatattactctcatgatgttgtagatcccatatctcactgttcagtactttatgccattcttgaatatcactttttgatctcaaaagtcc 18085687  T
Q  210 tgcaagtgtcttcaaagccaaaggcaatcccttgcactttctaactatttcccttccaactttgtatacactttgctgatgaacatttgaatccttatgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18085686 tgcaagtgtcttcaaagccaaaggcaatcccttgcactttctaactatttcccttccaactttgtatacactttgctgatgaacatttgaatccttatgg 18085587  T
Q  310 ccataaccaaa 320  Q
    |||||||||||    
T  18085586 ccataaccaaa 18085576  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 25743557 - 25743783
Alignment:
Q  33 ataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatattactctca 132  Q
    |||||||||||| |||| || ||||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||||| |||||||||||||||    
T  25743557 ataatcttttggaaaaactgaacaataagcaaaacatctctttacatgcgatggaagataatgataacttaatctcaaagctgggagaatattactctca 25743656  T
Q  133 tgatgttgtagatcccatatctcactgttcagtactttatgccattcttgaatatcactttttgacctcaaaagccctgcaagtgtcttcaaagccaaag 232  Q
    | ||  || | |||||||||||||||||| |||||||| | ||||||     |||||  |||  | |||| ||| || |||||||||||||  |||||||    
T  25743657 tcattctgcaaatcccatatctcactgtttagtactttgtaccattcccttgtatcatctttacatctcagaagtcccgcaagtgtcttcacggccaaag 25743756  T
Q  233 gcaatcccttgcactttctaactattt 259  Q
    ||||||| ||||||||| ||| |||||    
T  25743757 gcaatcctttgcactttttaattattt 25743783  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 26907577 - 26907484
Alignment:
Q  33 ataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    |||||| ||||| |||| || |||||| ||||||||||| || |||||||| || || || || ||||| ||   |||||||||||||||||||    
T  26907577 ataatcctttggaaaaagtgaacaatatgcaaaacatcttttcaaatgagagggaaggtattgataactcaaatgcaaagctggaagaatatta 26907484  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 10261378 - 10261285
Alignment:
Q  33 ataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    |||||| ||||| ||||||| |||||| ||||||||||| || |||||||| || ||||| || ||||| ||   |||||| ||||||||||||    
T  10261378 ataatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatatta 10261285  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 10664205 - 10664113
Alignment:
Q  34 taatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    ||||| ||||| ||||||| |||||| |||||||||||||| |||||||| || ||||| || ||||| ||   ||| || ||||||||||||    
T  10664205 taatcctttggaaaaattgaacaatatgcaaaacatctcttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatatta 10664113  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 10501253 - 10501186
Alignment:
Q  34 taatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaact 101  Q
    ||||||||||||||||| | |||||| ||||| ||||| ||||||||||| || ||||| || |||||    
T  10501253 taatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaagatattgataact 10501186  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 10528036 - 10527945
Alignment:
Q  35 aatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    |||| ||||| ||||||| |||||| ||||||||||| || |||||||| || ||||| || ||||| ||   |||||| ||||||||||||    
T  10528036 aatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatatta 10527945  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 10672360 - 10672269
Alignment:
Q  35 aatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    |||| ||||| ||||||| |||||| ||||||||||| || |||||||| || ||||| || ||||| ||   |||||| ||||||||||||    
T  10672360 aatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaaagcaggaagaatatta 10672269  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 11769907 - 11769821
Alignment:
Q  40 tttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    ||||| ||||||| |||||| ||||||||||| || || ||||| || ||||| || ||||||||   |||||| ||||||||||||    
T  11769907 tttggaaaaattgaacaatatgcaaaacatcttttcaagtgagatggaagatattgataacttaaatgcaaagcaggaagaatatta 11769821  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 10032683 - 10032590
Alignment:
Q  33 ataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    |||||| ||||| ||||||| |||||| ||||||||||| || |||||||| || ||||| || ||||| ||   ||| || ||||||||||||    
T  10032683 ataatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaagatattgataactcaaatgcaatgcaggaagaatatta 10032590  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 8569182 - 8569094
Alignment:
Q  22 ttttcaaattcataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaa 110  Q
    ||||||||||||||| | || || ||||||| |||||| |||||||| | ||| | ||  |||||||||| ||||||||| || |||||    
T  8569182 ttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaatctcaa 8569094  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 10089469 - 10089377
Alignment:
Q  34 taatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    ||||| ||||| ||||||| |||||| ||||||||||| || |||||| | || ||||| || ||||| ||   |||||| ||||||||||||    
T  10089469 taatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgacagggaagatattgataactcaaatgcaaagcaggaagaatatta 10089377  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 10196352 - 10196260
Alignment:
Q  34 taatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaacttaacctcaaagctggaagaatatta 126  Q
    ||||| ||||| ||||||| |||||| ||||||||||| || |||||| | || ||||| || ||||| ||   |||||| ||||||||||||    
T  10196352 taatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgacagggaagatattgataactcaaatgcaaagcaggaagaatatta 10196260  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 31679122 - 31679190
Alignment:
Q  33 ataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagataatggtaact 101  Q
    |||||| ||||||||||||| ||||||||| |||||| | || ||||||||||| ||||| || |||||    
T  31679122 ataatcctttgggaaaattgaacaataagcgaaacatgttttcaaatgagaaggaagatattgataact 31679190  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 14311885 - 14311817
Alignment:
Q  18 ctccttttcaaattcataatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagg 86  Q
    |||||||| |||  |||||| ||| ||||| |  ||||||||||||||||||||||| | |||||||||    
T  14311885 ctcctttttaaacacataatttttggggaataaggcacaataagcaaaacatctcttgagatgagaagg 14311817  T

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