View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18649_low_29 (Length: 331)

Name: NF18649_low_29
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18649_low_29
NF18649_low_29
[»] chr2 (4 HSPs)
chr2 (16-313)||(8021465-8021758)
chr2 (168-201)||(22400896-22400929)
chr2 (168-201)||(22792600-22792633)
chr2 (168-201)||(22966073-22966106)
[»] scaffold0257 (1 HSPs)
scaffold0257 (16-313)||(19729-20021)
[»] chr3 (32 HSPs)
chr3 (16-313)||(17743717-17744009)
chr3 (16-313)||(19045037-19045329)
chr3 (56-313)||(28163278-28163536)
chr3 (16-313)||(28187288-28187580)
chr3 (66-313)||(11421853-11422101)
chr3 (120-313)||(28057814-28058008)
chr3 (120-313)||(28068239-28068433)
chr3 (176-313)||(28152281-28152418)
chr3 (235-312)||(27430403-27430480)
chr3 (169-313)||(27954805-27954949)
chr3 (56-124)||(28060218-28060286)
chr3 (56-124)||(28070643-28070711)
chr3 (177-313)||(8538478-8538614)
chr3 (177-313)||(27920836-27920972)
chr3 (177-313)||(28038141-28038277)
chr3 (211-302)||(26138612-26138703)
chr3 (168-302)||(26109685-26109819)
chr3 (236-310)||(27458249-27458323)
chr3 (212-313)||(27777170-27777271)
chr3 (168-302)||(26203977-26204111)
chr3 (226-302)||(26126520-26126596)
chr3 (226-302)||(26176571-26176647)
chr3 (226-302)||(26232087-26232163)
chr3 (76-135)||(26126306-26126365)
chr3 (76-135)||(26176357-26176416)
chr3 (81-136)||(28152501-28152556)
chr3 (272-313)||(18078689-18078730)
chr3 (168-201)||(27356982-27357015)
chr3 (75-136)||(28508235-28508296)
chr3 (235-303)||(28479276-28479344)
chr3 (235-303)||(28508459-28508527)
chr3 (273-313)||(30993967-30994007)
[»] scaffold0922 (1 HSPs)
scaffold0922 (66-313)||(2367-2615)
[»] scaffold1147 (1 HSPs)
scaffold1147 (123-313)||(901-1092)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 8021758 - 8021465
Alignment:
Q  16 atagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagg 115  Q
    ||||||||||||| |||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8021758 atagtctaataactaagaggatcacttaaag------catcccgtgttcgtaaaatttgtgcctcctgttgagtgatgctctgcaaatcagcttcagagg 8021665  T
Q  116 aagccaattgatgcttaagatacttc-acacgttgtgtcaa-atgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaa 213  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021664 aagccaattgatgcttaagatacttccacacgttgtgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaa 8021565  T
Q  214 acaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  8021564 acaaagcacgcttttcgatatcatccaaccattccttatcaaaaggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaa 8021465  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 22400929 - 22400896
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagactt 201  Q
    ||||||| ||||||||||||||||||||||||||    
T  22400929 tccaacagtttttgcaatgcatcttgagagactt 22400896  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 22792633 - 22792600
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagactt 201  Q
    ||||||| ||||||||||||||||||||||||||    
T  22792633 tccaacagtttttgcaatgcatcttgagagactt 22792600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 22966106 - 22966073
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagactt 201  Q
    ||||||| ||||||||||||||||||||||||||    
T  22966106 tccaacagtttttgcaatgcatcttgagagactt 22966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 20021 - 19729
Alignment:
Q  16 atagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagg 115  Q
    ||||| |||||||||| ||||||||||||||      || |||| ||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  20021 atagtttaataaccaataggatcacttaaag------caccccgagtttgtaaaatttgtgcctcttgttgagtgatgctctgcaaaacagcttcagagg 19928  T
Q  116 aagccaattgatgcttaagatacttcacacgttgtgtcaa-atgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaa 214  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  19927 aagccaattgatgcttaagatccttcacatgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaa 19828  T
Q  215 caaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||  ||||||| | |||||||||||||| ||||||||||  | |  |||| |||||||||| |||||| | ||||||||||||||||||||||||    
T  19827 caaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttgaacctaa 19729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 17743717 - 17744009
Alignment:
Q  16 atagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagg 115  Q
    ||||||||||| |||| ||||||||||||||      || | || ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  17743717 atagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagg 17743810  T
Q  116 aagccaattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaa 214  Q
    || |||||||||||||||||| | ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  17743811 aatccaattgatgcttaagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaa 17743910  T
Q  215 caaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||  ||||||| | | |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  17743911 caaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaa 17744009  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 19045037 - 19045329
Alignment:
Q  16 atagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagg 115  Q
    ||||||||||| |||| ||||||||||||||      || | || ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  19045037 atagtctaatagccaataggatcacttaaag------cagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagg 19045130  T
Q  116 aagccaattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaa 214  Q
    || |||||||||||||||||| | ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  19045131 aatccaattgatgcttaagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaa 19045230  T
Q  215 caaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||  ||||||| | | |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  19045231 caaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaa 19045329  T

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Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 56 - 313
Target Start/End: Complemental strand, 28163536 - 28163278
Alignment:
Q  56 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtcaa 155  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |  |||| |||| |||||    
T  28163536 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaagatccgccacatgttgagtcaa 28163437  T
Q  156 a-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatca 254  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||||  |||||||||||||||||||||||||||||| |    
T  28163436 aatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaaccattccttatga 28163337  T
Q  255 aaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    || ||||| |||||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  28163336 aatggaaatctgcgtgcatcttgtagtaactcaacaaattcagagtggcttgaacctaa 28163278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 28187580 - 28187288
Alignment:
Q  16 atagtctaataaccaagaggatcacttaaaggcctttcatcccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagagg 115  Q
    ||||||||||| |||| ||||||||||||||      || |||| ||  ||||||||||| ||||||||||||||||| |||||||| |||||||| |||    
T  28187580 atagtctaatagccaataggatcacttaaag------cagcccgagtatgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcacagg 28187487  T
Q  116 aagccaattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaa 214  Q
    ||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||    
T  28187486 aagccaattgatgcttaagatcctccacatgttgtgtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaa 28187387  T
Q  215 caaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||  | ||||| |||||||||||||||||||||||||||  |||  |||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  28187386 caaagcgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaa 28187288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 66 - 313
Target Start/End: Complemental strand, 11422101 - 11421853
Alignment:
Q  66 taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtcaaa-tgtgtttt 164  Q
    ||||| |||| ||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || |||  |||| |||||| ||| ||||    
T  11422101 taaaaattgtgcctcctgctgagtgatgctctgtaaaacagcttcggaggaagccaattgatgcttaagatcctccacgtgttgagtcaaaatgtatttt 11422002  T
Q  165 gagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaac 264  Q
    |||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||  ||||||| | | ||||||||||||| || ||||||||||| |    
T  11422001 gagttcaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaaggaaatc 11421902  T
Q  265 tgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    | || |||||||||| |||||| | ||||  |||||  |||||||||||    
T  11421901 tacgcacatcttgtattaactcaacaaatgtagagtttcttgaacctaa 11421853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 313
Target Start/End: Complemental strand, 28058008 - 28057814
Alignment:
Q  120 caattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaa 218  Q
    ||||||||||||||||| || |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||    
T  28058008 caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaa 28057909  T
Q  219 gcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
     |  | ||||| |||||||||||||||||||||||||||  |||  |||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  28057908 acgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaa 28057814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 313
Target Start/End: Complemental strand, 28068433 - 28068239
Alignment:
Q  120 caattgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaa 218  Q
    ||||||||||||||||| || |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||    
T  28068433 caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaa 28068334  T
Q  219 gcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
     |  | ||||| |||||||||||||||||||||||||||  |||  |||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  28068333 acgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaa 28068239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 176 - 313
Target Start/End: Complemental strand, 28152418 - 28152281
Alignment:
Q  176 tttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatct 275  Q
    |||||||||||||| |||||||| |||  || || ||||||||||  || |||| | |||||||||||| ||||||||||| ||||| || || ||||||    
T  28152418 tttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatct 28152319  T
Q  276 tgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||||||| | ||||||||||| ||||||||||||    
T  28152318 tgtaataactcaacaaattcagagttgcttgaacctaa 28152281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 27430403 - 27430480
Alignment:
Q  235 catccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaaccta 312  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||| | |||||||||||||||||||||||    
T  27430403 catccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaaccta 27430480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 313
Target Start/End: Complemental strand, 27954949 - 27954805
Alignment:
Q  169 ccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcg 268  Q
    |||||| |||||||||||||| |||||||| |||  |  ||| | |||||||  ||||||| | | |||||||||| || |||||||||  | | |||||    
T  27954949 ccaacagtttttgcaatgcattttgagagaattgtaattcataagacaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcg 27954850  T
Q  269 tacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
     |||||||||||||| || | ||||||||||||||||||||||||    
T  27954849 cacatcttgtaataaatcaacaaattcagagtggcttgaacctaa 27954805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 28060286 - 28060218
Alignment:
Q  56 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt 124  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28060286 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt 28060218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 28070711 - 28070643
Alignment:
Q  56 cccgtgttcgtaaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaatt 124  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28070711 cccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt 28070643  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 8538478 - 8538614
Alignment:
Q  177 ttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatctt 276  Q
    ||||||||||||| |||||||| |||  || || ||||||||||  ||||||| | |  ||||||||| ||||||||||||  | |  | || |||||||    
T  8538478 ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatctt 8538577  T
Q  277 gtaataactcgataaattcagagtggcttgaacctaa 313  Q
    |||||||||| | ||||||||| ||||||||||||||    
T  8538578 gtaataactcaacaaattcagattggcttgaacctaa 8538614  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 27920972 - 27920836
Alignment:
Q  177 ttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatctt 276  Q
    ||||||||||||| || ||||| |||  |  ||||| |||||||  ||||||| | | |||||||||| || |||||||||  | | ||||| |||||||    
T  27920972 ttttgcaatgcattttcagagaattgtaattcatgagacaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatctt 27920873  T
Q  277 gtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||| || | ||||||||||||||||||||||||    
T  27920872 gtaataaatcaacaaattcagagtggcttgaacctaa 27920836  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 28038277 - 28038141
Alignment:
Q  177 ttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatctt 276  Q
    ||||||||||||| |||||||| ||   || || ||||||||||| ||||||||| | |||| ||||| || ||||| |||  | | ||||| |||||||    
T  28038277 ttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatctt 28038178  T
Q  277 gtaataactcgataaattcagagtggcttgaacctaa 313  Q
    |||| ||||| | |||||||| |||||||||||||||    
T  28038177 gtaacaactcaacaaattcagtgtggcttgaacctaa 28038141  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 26138612 - 26138703
Alignment:
Q  211 gaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtgg 302  Q
    ||||||||||  || |||||| | |||||||||| ||||||||||||  ||| || ||| |||||||||||||||| | |||||||||||||    
T  26138612 gaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatcttgtaataactccacaaattcagagtgg 26138703  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 26109685 - 26109819
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgc 267  Q
    ||||| ||||| ||||| |||||||| || |||||   | || | ||||||||  || |||||| | |||||||||| ||||||||||||  ||| |||     
T  26109685 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26109784  T
Q  268 gtacatcttgtaataactcgataaattcagagtgg 302  Q
    |  |||||||||||||||| |||||||||||||||    
T  26109785 gcgcatcttgtaataactccataaattcagagtgg 26109819  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 27458249 - 27458323
Alignment:
Q  236 atccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacc 310  Q
    |||||||||  |||||||||||| ||| ||||||||||||||||||||||  | ||||| |||| ||||||||||    
T  27458249 atccaaccaagccttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacc 27458323  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 27777271 - 27777170
Alignment:
Q  212 aaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacct 311  Q
    |||||||||| | ||||| | | |||||||||| || |||||||||  | | |||||||||||||||||||||||   ||| |||||| |||||||||||    
T  27777271 aaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaaccacatctgcgtacatcttgtaataactcatcaaactcagagcggcttgaacct 27777172  T
Q  312 aa 313  Q
    ||    
T  27777171 aa 27777170  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 26203977 - 26204111
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaactgc 267  Q
    ||||| ||||| ||||| |||||||| || |||||   | || | ||||||||  || |||||| | |||||||||| ||||||||||||  ||| |||     
T  26203977 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26204076  T
Q  268 gtacatcttgtaataactcgataaattcagagtgg 302  Q
    |  |||||||||||||||| | |||||||||||||    
T  26204077 gcgcatcttgtaataactccagaaattcagagtgg 26204111  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 26126520 - 26126596
Alignment:
Q  226 tttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtgg 302  Q
    |||||| | |||||||||| ||||||||||||  ||| || ||| ||||||||||||||||   |||||||||||||    
T  26126520 tttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtgg 26126596  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 26176571 - 26176647
Alignment:
Q  226 tttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtgg 302  Q
    |||||| | |||||||||| ||||||||||||  ||| || ||| ||||||||||||||||   |||||||||||||    
T  26176571 tttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtgg 26176647  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 26232087 - 26232163
Alignment:
Q  226 tttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtgg 302  Q
    |||||| | |||||||||| ||||||||||||  ||| || ||| ||||||||||||||||   |||||||||||||    
T  26232087 tttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtgg 26232163  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 26126306 - 26126365
Alignment:
Q  76 acctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaaga 135  Q
    ||||| |||||| |||| |||| |||| |||||| |||||| ||||||||||||||||||    
T  26126306 acctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga 26126365  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 26176357 - 26176416
Alignment:
Q  76 acctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaaga 135  Q
    ||||| |||||| |||| |||| |||| |||||| |||||| ||||||||||||||||||    
T  26176357 acctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga 26176416  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 28152556 - 28152501
Alignment:
Q  81 ctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagat 136  Q
    ||||||| ||||  ||| |||||||||||||||||| | |||||||||||||||||    
T  28152556 ctgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagat 28152501  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 18078689 - 18078730
Alignment:
Q  272 atcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  18078689 atcttgtaataactcaacaaattcagaatggcttgaacctaa 18078730  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 27357015 - 27356982
Alignment:
Q  168 tccaacaatttttgcaatgcatcttgagagactt 201  Q
    ||||||| ||||||||||||||||||||||||||    
T  27357015 tccaacagtttttgcaatgcatcttgagagactt 27356982  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 28508235 - 28508296
Alignment:
Q  75 tacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagat 136  Q
    |||||| |||||| |||| |||| |||| ||||||||||||| | |||||| ||||||||||    
T  28508235 tacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagat 28508296  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 28479276 - 28479344
Alignment:
Q  235 catccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggc 303  Q
    |||||||||| |||||||| |||  ||| |||||  |||||||||||||||| | ||||| ||||||||    
T  28479276 catccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggc 28479344  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 28508459 - 28508527
Alignment:
Q  235 catccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggc 303  Q
    |||||||||| ||||||||||||  ||| |||||  ||||||||| |||||| | ||||| ||||||||    
T  28508459 catccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 28508527  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 30994007 - 30993967
Alignment:
Q  273 tcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  30994007 tcttctaataactcaacaaattcagagtggcttgaacctaa 30993967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 66 - 313
Target Start/End: Complemental strand, 2615 - 2367
Alignment:
Q  66 taaaatttgtacctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatacttcacacgttgtgtcaaa-tgtgtttt 164  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||| || |||| |||| |||||| ||||||||    
T  2615 taaaatctgtgcctcctgttgagtgatgttctgcaaaacagcttcaaaggaagccaattgatgtttaagatcctccacatgttgagtcaaaatgtgtttt 2516  T
Q  165 gagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcaagcttttcgatatcatccaaccattccttatcaaaaggaaaac 264  Q
    |||||||| || |||||||  |||| ||||||||||||  ||||| ||||||| || |||||||| | | ||||||||||||| |||||||||||||| |    
T  2515 gagtccaaaaaattttgcagcgcattttgagagacttgtaaaccaggaaacaaggcgagcttttcaacaccatccaaccattctttatcaaaaggaaatc 2416  T
Q  265 tgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
    | || | ||||||||||| ||| | ||||||||| ||||||||||||||    
T  2415 tacgcatatcttgtaatagctcaacaaattcagaatggcttgaacctaa 2367  T

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Target: scaffold1147 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 313
Target Start/End: Complemental strand, 1092 - 901
Alignment:
Q  123 ttgatgcttaagatacttcacacgttgtgtcaaa-tgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagca 221  Q
    |||||||||||||| || |||| |||| |||||| |||||||| ||||||||||||||||||||| |||| ||||||||||  ||| | |||||||||      
T  1092 ttgatgcttaagatcctccacatgttgagtcaaaatgtgttttaagtccaacaatttttgcaatgtatctagagagacttgtaaactaggaaacaaagtg 993  T
Q  222 agcttttcgatatcatccaaccattccttatcaaaaggaaaactgcgtacatcttgtaataactcgataaattcagagtggcttgaacctaa 313  Q
     | ||||||| | |||| ||||  ||||| ||||||| |||  || | |||||||| | |||||| |  |||| ||||| ||||||||||||    
T  992 tgtttttcgacaccatctaaccgatccttgtcaaaagcaaatatgtgcacatcttggattaactcaaccaatttagagttgcttgaacctaa 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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