View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_32 (Length: 308)
Name: NF18649_low_32
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 771373 - 771592
Alignment:
| Q |
16 |
atgtcaaaatttgtaaacaagttagaaaagaacacataaactctcttatgttagtatgccttttagcaagagttacttaattgtaattggttgactgtct |
115 |
Q |
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| T |
771373 |
atgtcaaaatttgaaagcaagttagagaagaacacataaactctcttatgttagtatgccttttagcaagagttacttaattgtaattggttgactgtct |
771472 |
T |
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| Q |
116 |
ataaatagaaatagagggagggaaagaggcattgagtgagtaattt-aatttggataatggagttaaggttctcataacaacctgaagtgtatcgtttac |
214 |
Q |
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| T |
771473 |
ataaatagaaatagagggagggaaagagtcattgagcgagtaatttaaatttggataatggagttaaggttctcataacaacgtgaagtgtatcatttac |
771572 |
T |
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| Q |
215 |
tcaatttaatatagaattat |
234 |
Q |
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| T |
771573 |
tcaatttaatatagaattat |
771592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 771666 - 771720
Alignment:
| Q |
231 |
ttatgtaagtattattgtattaaaagccatacacaagagtgtatgactacaaact |
285 |
Q |
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| T |
771666 |
ttatgtaagtattattgtattaaaagccatacacaagagtgtatgactacaaact |
771720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 25386792 - 25386963
Alignment:
| Q |
61 |
ttatgttagtatgccttttagcaagagttacttaattgtaattggttgactgtctataaatagaaatagagggagggaaagaggcattgagtgagtaatt |
160 |
Q |
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| T |
25386792 |
ttatgttggtatcccttttagcaagagttagttaatgctgatgagttaactgtctataaatataaatagagggagggaaagaggcattgagtgagtaatt |
25386891 |
T |
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| Q |
161 |
-taatttggataatggagttaaggttctcataacaacctgaagtgtatcgtttactcaatttaatatagaatt |
232 |
Q |
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| T |
25386892 |
aaaatttggat-ggagagttaaggttctcataacaacctgaagtgtatcatttactcaattgaatagagaatt |
25386963 |
T |
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