View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_33 (Length: 302)
Name: NF18649_low_33
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_33 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 270112 - 270390
Alignment:
| Q |
16 |
acaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
270112 |
acaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcggccggt |
270211 |
T |
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| Q |
116 |
gagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270212 |
gagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggtt |
270311 |
T |
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| Q |
216 |
gaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270312 |
gaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
270390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 17589255 - 17588986
Alignment:
| Q |
25 |
ttatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatc |
124 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||| | ||| ||||| ||||||| ||| || |
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| T |
17589255 |
ttatttcatatccatggcttctaatgacattagctgagattattctatcatttatgtgggttttcaaccaagcgttccgttggcggccggtgactcgttc |
17589156 |
T |
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| Q |
125 |
ggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatg |
224 |
Q |
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|| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17589155 |
agtgatgaccgagaaattaccggctgaagagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggtagaagttatg |
17589056 |
T |
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| Q |
225 |
aacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
294 |
Q |
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||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
17589055 |
aacactgttgtttctgctattgctatggattaccctcctgataaactttctatttatctttctgatgatg |
17588986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 11730 - 11999
Alignment:
| Q |
25 |
ttatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatc |
124 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||| ||| ||| | | ||| | ||| || |
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| T |
11730 |
ttatttcatatccatggtttctaatgacaatagctgagattattctatcatttttgtggtttttcaaccaagcattccgttggaggctggtaaatcgttc |
11829 |
T |
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| Q |
125 |
ggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatg |
224 |
Q |
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|| ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11830 |
agttatgaccgagaaattaccgcccgacgagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggttgatgttatg |
11929 |
T |
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| Q |
225 |
aacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
294 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11930 |
aacactgttatttctgctattgcaatggactacccttctaataaactttctatttatctttctgatgatg |
11999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 16386098 - 16385834
Alignment:
| Q |
30 |
tcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatcggtaa |
129 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | ||| | ||||||||| | ||||||||| ||| ||||| ||| | | |||||| || | |
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| T |
16386098 |
tcatatccatggtttctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagtta |
16385999 |
T |
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| Q |
130 |
tggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacac |
229 |
Q |
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|| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |
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| T |
16385998 |
tgaccgagaatttaccggccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaagaaccaactattgatgttatgaacac |
16385899 |
T |
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| Q |
230 |
tgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
294 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
16385898 |
tgttgtttctgctattgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
16385834 |
T |
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