View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18649_low_43 (Length: 240)

Name: NF18649_low_43
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18649_low_43
NF18649_low_43
[»] chr5 (2 HSPs)
chr5 (95-225)||(27507751-27507878)
chr5 (1-56)||(27507916-27507971)
[»] chr7 (2 HSPs)
chr7 (1-49)||(26145808-26145856)
chr7 (21-56)||(44748163-44748198)
[»] chr6 (2 HSPs)
chr6 (1-49)||(137288-137336)
chr6 (1-49)||(30232121-30232169)
[»] chr4 (1 HSPs)
chr4 (21-56)||(35193102-35193137)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 27507878 - 27507751
Alignment:
Q  95 ggtgcttgagaaattgtgagagaggagaatgaagatctacatgaaacaacagaaagaattttacactttcaccaaatgctagtaataataactaagctaa 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||   |||||||||||||||    
T  27507878 ggtgcttgagaaattgtgagagaggagaatgaagatctacatgaaacaacagaaagaattttacactttcaccaaaagatag---taataactaagctaa 27507782  T
Q  195 gtgagattgtatagtgtatttacttatattt 225  Q
    |||||||||||||||||||||||||||||||    
T  27507781 gtgagattgtatagtgtatttacttatattt 27507751  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27507971 - 27507916
Alignment:
Q  1 ccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27507971 ccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa 27507916  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26145856 - 26145808
Alignment:
Q  1 ccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26145856 ccatctcctcttcttgttccgcttgttcatcaaattccatttcactctt 26145808  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 44748163 - 44748198
Alignment:
Q  21 tcttgttcatcaaattccatttcactcttcaaacaa 56  Q
    |||||||||||||||||||| |||||||||||||||    
T  44748163 tcttgttcatcaaattccatctcactcttcaaacaa 44748198  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 137336 - 137288
Alignment:
Q  1 ccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  137336 ccatctcctcttcttgttccgcttattcatcaaattccatttcactctt 137288  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30232169 - 30232121
Alignment:
Q  1 ccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  30232169 ccatctcctcttcttgttccgcttattcatcaaattccatttcactctt 30232121  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 35193102 - 35193137
Alignment:
Q  21 tcttgttcatcaaattccatttcactcttcaaacaa 56  Q
    |||||||||||||||||||| |||||||||||||||    
T  35193102 tcttgttcatcaaattccatctcactcttcaaacaa 35193137  T

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