View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_45 (Length: 238)
Name: NF18649_low_45
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 27508217 - 27508438
Alignment:
| Q |
5 |
gcttgtaactgtcaccggaactcccaccgcaaagagatcgatggagaaacggttagttcatgtacccggccccagccaccacctccaccgccgcaatacc |
104 |
Q |
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| T |
27508217 |
gcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaaacggttagttcatgtaaccggccacagccaccacctccaccgccgcaatacc |
27508316 |
T |
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| Q |
105 |
atcaccacagcaatcaattctcgccttactaccaccgcgctcctccttccacagccggttaccttcaccaccatcatcttgcaactccggtggcacatca |
204 |
Q |
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| T |
27508317 |
atcaccacaacaatcaattctcgccttactaccaccgtgctcctccttccacagccggttaccttcaccaccatcatcttgcaactccggtggcacatca |
27508416 |
T |
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| Q |
205 |
cagaccgttggctctctctgct |
226 |
Q |
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|||||||||||||||| ||||| |
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| T |
27508417 |
cagaccgttggctctccctgct |
27508438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 35192913 - 35192870
Alignment:
| Q |
5 |
gcttgtaactgtcaccggaactcccaccgcaaagagatcgatgg |
48 |
Q |
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| T |
35192913 |
gcttgtaactgtcaccagaacttccaccgcaaagagatcgatgg |
35192870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 44747974 - 44747931
Alignment:
| Q |
5 |
gcttgtaactgtcaccggaactcccaccgcaaagagatcgatgg |
48 |
Q |
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|||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
44747974 |
gcttgtaactgtcaccagaacttccactgcaaagagatcgatgg |
44747931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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