View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18649_low_46 (Length: 238)
Name: NF18649_low_46
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 26279169 - 26278977
Alignment:
| Q |
29 |
ttgcctcaaataattaaccaagaaacaaagattatattttgtatctatatatgtatctggtaactgaaaaccaaaccaagaattgcccattctagaaagc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26279169 |
ttgcctcaaataattaaccaagaaacaaagattatattttgtatctatatatgtatctggttactgaaaaccaaaccaagaattgtccattctagaaagc |
26279070 |
T |
|
| Q |
129 |
aaacacattacatcgtccccacatgcaaaataatttggtctgtttggtac-ta-tacaagatatcattgcataaaaaccatgataaacaagtt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26279069 |
aaacacattacatcgtccccacatgcaaaataatttgatctgtttggttggtactacaagatatcattgcataaaaaccatgataaacaagtt |
26278977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 26282313 - 26282214
Alignment:
| Q |
122 |
agaaagcaaacacattacatcgtccccacatgcaaaataatttggtctgtttggtac-ta-tacaagatatcattgcataaaaaccatgataaacaagtt |
219 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26282313 |
agaaaacaaacacattaaatcgttcccacatgcaaaataatttggtctgtttggttggtactacaagatatcattgcataaaaaccatgataaacaagtt |
26282214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 26282728 - 26282681
Alignment:
| Q |
35 |
caaataattaaccaagaaacaaagattatattttgtatctatatatgt |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26282728 |
caaataattaaccaagaaacaaagattatattttgtatctatatatgt |
26282681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University