View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_50 (Length: 224)
Name: NF18649_low_50
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_50 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 21265718 - 21265932
Alignment:
| Q |
10 |
tttccaaaatattaccggtgtcggtgtcgtgtgttcatgttagtgctttatagttaatgtcaaacccgagaacaaattaaacataaaactaaatatcata |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21265718 |
tttccaaaatattaccggtgtcagtgtcgtgtgttcatgttagtgctttatagttaatgtcaaacccgagaacaaattaaacataaaactaaatatcata |
21265817 |
T |
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| Q |
110 |
tcaatttcctaacagcaacaaaaaccacacatgcattttaaataaactcaacaaataggatattccatcaattcaataaatgaataaacaatttcaatcc |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21265818 |
tcaatttcctaacagcaacaaaaaccacacatggattttaaataaactcaacaaataggatattccatcaattcaacaaatgaataaacaatttcaatcc |
21265917 |
T |
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| Q |
210 |
aaaatcgcatgaaac |
224 |
Q |
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||||||||||||||| |
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| T |
21265918 |
aaaatcgcatgaaac |
21265932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 18636287 - 18636410
Alignment:
| Q |
10 |
tttccaaaatattaccggtgtcggtgtcgtgtgttcatgttagtgctttatagttaatgtcaaacccgagaacaaattaaacataaaactaaatatcata |
109 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18636287 |
tttccaaagtattaccggtgtcggtgtcttgtgttcatgttagtgctttatagttaatgtcaaacccgggaacaaattaaacataaaactaaatatcata |
18636386 |
T |
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| Q |
110 |
tcaatttcctaacagcaacaaaaa |
133 |
Q |
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| T |
18636387 |
tcaatttcctaacagcaacaaaaa |
18636410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18636402 - 18636468
Alignment:
| Q |
158 |
caacaaataggatattccatcaattcaataaatgaataaacaatttcaatccaaaatcgcatgaaac |
224 |
Q |
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| T |
18636402 |
caacaaaaaggatattccatcaattcaacaaatgaattaacaattttaatccaaaatcgcatgaaac |
18636468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 672262 - 672065
Alignment:
| Q |
27 |
gtgtcggtgtcgtgtgttcatgttagtgctttatagttaatgtcaaacccgagaacaaattaaacataaaactaaatatcatatcaatttcctaacagca |
126 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
672262 |
gtgtcagtgtcgtgtgttcatgttagtgctttatagttaatgtcaaacccgagaacaaattaaacataaaactaaatatgatatcaatttcctaacagca |
672163 |
T |
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| Q |
127 |
acaaaaaccacacatgcattttaaataaactcaacaaataggatattccatcaattcaataaatgaataaacaatttcaatccaaaatcgcatgaaac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
672162 |
acaaaaaccacacatgcattttaaataaactcaacaaataggatattccatcaattcaacaaatgaataaccaatttcaatccaaaatcgcatgaaac |
672065 |
T |
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