View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_51 (Length: 223)
Name: NF18649_low_51
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_51 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 54472088 - 54472302
Alignment:
| Q |
9 |
acatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggt |
108 |
Q |
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| T |
54472088 |
acatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggt |
54472187 |
T |
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| Q |
109 |
gcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472188 |
gcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactc |
54472287 |
T |
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| Q |
209 |
cagcacacggtatat |
223 |
Q |
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||||||||||||||| |
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| T |
54472288 |
cagcacacggtatat |
54472302 |
T |
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