View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_6 (Length: 501)
Name: NF18649_low_6
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 486
Target Start/End: Original strand, 4615367 - 4615849
Alignment:
| Q |
4 |
agaccactcattattttgtcatatatagtctattggttattatttacccgtgtctgaatccggcaaattttggatatcgtcaaaatatcagcccctccaa |
103 |
Q |
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| T |
4615367 |
agaccactcattattttgtcatatatagtctattggttattatttacccatgtctgaatccggcaaattttggatatcgccaaaatatcagcccctccaa |
4615466 |
T |
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| Q |
104 |
gaatttggacacataataaagaacagaannnnnnngtctttcaacaacgactatagattccctccaaagtcacaattacataaaagccaaatttttcaat |
203 |
Q |
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| T |
4615467 |
gaatttggacacataataaagaacagaatttttttgtctttcaacaaggactatagattctctccaaagtcacaattacataaaagccaaattttccaat |
4615566 |
T |
|
| Q |
204 |
caacaatgatggatgtattttaatactttattatgggccataatttttgggtatatgaggtatcagctcgggacaaaaggtatttcgtaaaatggttatt |
303 |
Q |
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| T |
4615567 |
caagagtg-tggatgtattttaatactttattatgggccataatttttgggtatatgaggtatcagctcgggacaaaaggtatttcataaaatggttatt |
4615665 |
T |
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| Q |
304 |
attgtcactttagaatgaagactcaattcggtccttc-nnnnnnntttgtgggctaatttagtctctaacaaaaaataaacccaaaatagtccttctatt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4615666 |
attgtcactttagaatgaagactcaattcggtccttcacaaaaaatttgtgggccaatttagtctctaacaaaaaataaacccaaaatagtccttctatt |
4615765 |
T |
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| Q |
403 |
ttaatattgatgagaaattagaacgtaactctttgtattagagtaactaatttgtccgttgtatgaaaatcccagggaataatt |
486 |
Q |
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| T |
4615766 |
ttaatattgacgagaaattagaacgtaactctttgtattagagtaactaatttgtccgttgtatgaaaatcccaaggaataatt |
4615849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 4559625 - 4559657
Alignment:
| Q |
165 |
ctccaaagtcacaattacataaaagccaaattt |
197 |
Q |
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| T |
4559625 |
ctccaaagtcacaattgcataaaagccaaattt |
4559657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 36167642 - 36167670
Alignment:
| Q |
287 |
ttcgtaaaatggttattattgtcacttta |
315 |
Q |
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| T |
36167642 |
ttcgtaaaatggttattattgtcacttta |
36167670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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