View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_7 (Length: 489)
Name: NF18649_low_7
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Original strand, 31041872 - 31042328
Alignment:
| Q |
21 |
gacaatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttatannnnnnnnnn-ctagtgttgagaatggatctacat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
31041872 |
gacaatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttatatatttttttttctagagttgagaatggatctacat |
31041971 |
T |
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| Q |
120 |
ttgttaatgatgacaccaaattcattgatgtcactatgaactacaagttgacattccatttctattaacagtaacactagttcctctgatatgtcagtca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31041972 |
ttgttaatgatgacaccaaattcattgatgtcactatgaactacaagttgacattccatatctattaacagtaacactagttcctctgatatgtcagtca |
31042071 |
T |
|
| Q |
220 |
accattctaatgcttgccataa---tgctatacattcagcttcatgagaaagaagctttccataatgccataatctgagaaaacaatgccagtcatcctc |
316 |
Q |
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| T |
31042072 |
accattctaatgcttgccataataatgctatacattcagcttcatgagaaagaagctttccataatgccataatctgagaaaacaatgccagtcatcctc |
31042171 |
T |
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| Q |
317 |
caccaaaacgtcgcagtactgacagcttgatagtgatgaatctatgagggactataggccaaccaaactttatattttccatccttgctgaatttctaca |
416 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31042172 |
catcaaaacgtcgcagtactgacagcttgatagtgatgaatctatgagggactataggccaaccaaactttatattttccatccttgctgaatttctaca |
31042271 |
T |
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| Q |
417 |
ccagtgcatcttcattattaattttcatgataggcattcttgtcacactatatatgt |
473 |
Q |
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| T |
31042272 |
ccagtgcatcttcattattaatttgcatgataggcattcttgtcacactatatatgt |
31042328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 31068640 - 31068767
Alignment:
| Q |
24 |
aatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttata--nnnnnnnnnnctagtgttgagaatggatctacattt |
121 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
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| T |
31068640 |
aatgtcactatggcgaacaccttgaaaaagacggctataaaaaggttctttcaagctttatatgttttttctttctggtgttaagaatggatctacattt |
31068739 |
T |
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| Q |
122 |
gttaatgatgacaccaaattcattgatg |
149 |
Q |
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| T |
31068740 |
gttaatgacgacaccaaattcattgatg |
31068767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 486
Target Start/End: Original strand, 31069154 - 31069273
Alignment:
| Q |
368 |
ctataggccaaccaaactttatattttccatccttgctgaatttctacaccagtgcatcttcattattaattttcatgataggcattc-ttgtcacacta |
466 |
Q |
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||||||||| ||| |||| ||||| || |||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| ||| || |||| ||| |
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| T |
31069154 |
ctataggccgaccgaactgtatatatttcatccttgctcaatttctacaccagtgcatcttcattattaatatgcataataggtgttctttttcactcta |
31069253 |
T |
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| Q |
467 |
tatatgtgatgatgtccatc |
486 |
Q |
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||||||| ||| ||| |||| |
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| T |
31069254 |
tatatgtcatgttgttcatc |
31069273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 31068785 - 31068859
Alignment:
| Q |
151 |
cactatgaactacaagttgacattccatttctattaacagtaacactagttcctctgatatgtcagtcaaccattcta |
228 |
Q |
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|||||||||||||| ||||||||||||||||||| | | ||||||| | |||||||||||| ||||| ||||||||| |
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| T |
31068785 |
cactatgaactacatgttgacattccatttctat--atactaacact-ggtcctctgatatgccagtcgaccattcta |
31068859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 31055321 - 31055380
Alignment:
| Q |
368 |
ctataggccaaccaaactttatattttccatccttgctgaatttctacaccagtgcatct |
427 |
Q |
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| T |
31055321 |
ctataggccgaccgagctgtatattttctatccttgctggatttctacaccagtccatct |
31055380 |
T |
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