View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_8 (Length: 480)
Name: NF18649_low_8
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 42 - 472
Target Start/End: Complemental strand, 7898554 - 7898124
Alignment:
| Q |
42 |
gcatcaactacctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagag |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898554 |
gcatcaactacctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagag |
7898455 |
T |
|
| Q |
142 |
tactttaatctcttcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaa |
241 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898454 |
tactttaatctcctcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaa |
7898355 |
T |
|
| Q |
242 |
attagccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgca |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898354 |
attagccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgca |
7898255 |
T |
|
| Q |
342 |
accaccgcatcacctccaaccaaactctacatgtaacttgggaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacgcatctctt |
441 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7898254 |
accaccgcatcacctccaaccaaacactacatgtaacttggcaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacacatctctt |
7898155 |
T |
|
| Q |
442 |
tgagccttctatcgccaaaagctttcttctc |
472 |
Q |
| |
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||||||||| || ||||||||| |||||||| |
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|
| T |
7898154 |
tgagccttcaattgccaaaagccttcttctc |
7898124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 21281457 - 21281601
Alignment:
| Q |
62 |
cactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatctcttcaacca |
161 |
Q |
| |
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||||||||| ||||||| |||||||| ||||| |||||||| || || | || ||||||||||||||| | || | | || ||| || || || |||| |
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| T |
21281457 |
cactctctcagattccagcaccattcgtaaaacaagcaagacgaaatcctgagcctattcaaactccaactagacgaaa-taattttatttcctccacca |
21281555 |
T |
|
| Q |
162 |
tttcatcaacctccttaaccttgtcattgaaaatccggtcatttct |
207 |
Q |
| |
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|||||||||||||||||| |||| ||| |||||| |||||||||| |
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| T |
21281556 |
tttcatcaacctccttaattttgttattaaaaatctggtcatttct |
21281601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 271
Target Start/End: Original strand, 36857174 - 36857394
Alignment:
| Q |
53 |
ctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatct |
152 |
Q |
| |
|
||||| || |||||||| |||||||||||||||| ||| || || ||||| | ||||| || | ||||||||||| | |||| |||| || || | | |
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| T |
36857174 |
ctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttgactt |
36857273 |
T |
|
| Q |
153 |
cttcaaccatttcatcaacctc--cttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaa |
250 |
Q |
| |
|
| || ||||||||||||||||| ||| ||||| | || || |||| ||||||||| || |||||||| |||||||| ||||| ||||||||| |||| |
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| T |
36857274 |
cctccaccatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaa |
36857373 |
T |
|
| Q |
251 |
gcccctctcctccatttcttc |
271 |
Q |
| |
|
||||||||| || |||||||| |
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|
| T |
36857374 |
gcccctctcttcaatttcttc |
36857394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 14340077 - 14339966
Alignment:
| Q |
74 |
ttccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatctcttcaaccatttcatcaacct |
173 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||| | |||||||||||||||| |||||||| ||| ||||| || || |||||||| |||||| |
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|
| T |
14340077 |
ttccaacaccattcttaaaataaacaggacaagatttttaacctattcaaactccaataccacaagactaccttaatttcctccaccatttcgacaacct |
14339978 |
T |
|
| Q |
174 |
ccttaaccttgt |
185 |
Q |
| |
|
|||| ||||||| |
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|
| T |
14339977 |
cctttaccttgt |
14339966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 27895122 - 27895217
Alignment:
| Q |
161 |
atttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccct |
256 |
Q |
| |
|
||||||||||| ||||||||||||| || || |||| ||||||||| || || ||||| |||||||| |||||||||||||||| |||| ||||| |
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|
| T |
27895122 |
atttcatcaacatccttaaccttgttgttaaagatcccgtcatttctcgattttcaaataacccaaattaccgaatgccaaattaaccaaacccct |
27895217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 27895037 - 27895114
Alignment:
| Q |
64 |
ctctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagag |
141 |
Q |
| |
|
||||||||| || || |||||||| ||||||||||| ||| | ||| || |||||||||||||||||| ||||||| |
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|
| T |
27895037 |
ctctctcgggtttcagcaccattcgtaaaataagcatgatagaacttttagcctattcaaactccaattctacaagag |
27895114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 36857467 - 36857508
Alignment:
| Q |
334 |
gaattgcaaccaccgcatcacctccaaccaaactctacatgt |
375 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||| |
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|
| T |
36857467 |
gaattgaaaccacctcatcacctccaaccaaactctagatgt |
36857508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 27895295 - 27895331
Alignment:
| Q |
334 |
gaattgcaaccaccgcatcacctccaaccaaactcta |
370 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
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|
| T |
27895295 |
gaattgcagccaccgcatcacatccaaccaaactcta |
27895331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 8560187 - 8560267
Alignment:
| Q |
47 |
aactacctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactc |
127 |
Q |
| |
|
|||||||||| ||||||| ||| || |||||||||||||||||||| ||| | ||||||||||||| ||||| |||||| |
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|
| T |
8560187 |
aactacctacacaagcactttcttgggttccaacaccattcataaaacaagtatgatgagattttaaacctattaaaactc |
8560267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 43441336 - 43441377
Alignment:
| Q |
61 |
gcactctctcggattccaacaccattcataaaataagcaaga |
102 |
Q |
| |
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|||||||||||||||||||||||| || ||||| |||||||| |
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|
| T |
43441336 |
gcactctctcggattccaacaccactcgtaaaagaagcaaga |
43441377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 30995509 - 30995466
Alignment:
| Q |
61 |
gcactctctcggattccaacaccattcataaaataagcaagatg |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
30995509 |
gcactctctcggattccaacaccattcgtaaaataggcaagatg |
30995466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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