View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_high_17 (Length: 274)
Name: NF1864_high_17
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 19796540 - 19796762
Alignment:
| Q |
30 |
gagtttgagggcggtgagaggggttttggaccaagcattttttagtctctcaatgagtgtttcagaaggagtatcaggaacaacatggaagaagaaatcg |
129 |
Q |
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| T |
19796540 |
gagtttgagggcggtgagagggttttgggaccaagcaagtttgagtctctcaacgagtgtttcagaaggagtatcaggaacaacatggaagaagaaatcg |
19796639 |
T |
|
| Q |
130 |
aggcaagggttaccggtggagagaaacgttggtggcatgttctctgttaaccccatcggtgggtttcggtttctaccaagagaattgaagttggcgacca |
229 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19796640 |
aggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaagagaattgaagttggcgacca |
19796739 |
T |
|
| Q |
230 |
tttgatcgaggaagacatcgtta |
252 |
Q |
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||||||||||||||||||||||| |
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| T |
19796740 |
tttgatcgaggaagacatcgtta |
19796762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 15835778 - 15836000
Alignment:
| Q |
30 |
gagtttgagggcggtgagaggggttttggaccaagcattttttagtctctcaatgagtgtttcagaaggagtatcaggaacaacatggaagaagaaatcg |
129 |
Q |
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||||||||||| |||||| ||| | | |||||| || ||| |||||||| | ||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
15835778 |
gagtttgagggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaagaaatca |
15835877 |
T |
|
| Q |
130 |
aggcaagggttaccggtggagagaaacgttggtggcatgttctctgttaaccccatcggtgggtttcggtttctaccaagagaattgaagttggcgacca |
229 |
Q |
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||||| |||||||||||||||||||| || |||| ||||||||| || ||||||||| ||||||||||||| || | ||||||||||||||| | |||| |
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| T |
15835878 |
aggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttgccagagaattgaagttgtccacca |
15835977 |
T |
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| Q |
230 |
tttgatcgaggaagacatcgtta |
252 |
Q |
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||||||||| ||||||| |||| |
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| T |
15835978 |
tttgatcgacaaagacattgtta |
15836000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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