View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_high_18 (Length: 268)
Name: NF1864_high_18
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 29448508 - 29448748
Alignment:
| Q |
8 |
acctgtgtgctatcatggattttgagaatgtgaacggaaaattcttagcttcaaagttacacctatatatagcaagttatccagttagctcattttcagc |
107 |
Q |
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| T |
29448508 |
acctgtgtgctatcatggattttgagaatgtgcacggaaaattcttagcttcaaagttacagctata----gcaagttatccagttacctcaatttcagc |
29448603 |
T |
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| Q |
108 |
tatccttaaaattcttaccatttctaatagtggctaacatccgccacatcaaatataagttaaattgttatgaacaaatgatgcagtgaaagtttgtgtc |
207 |
Q |
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| T |
29448604 |
tatccttaaaattcttaccatttctaatagtggctaacatctgccacatcaaatataagttaaattgttatgaacaaatgatgcagtgaaagtttgtgtc |
29448703 |
T |
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| Q |
208 |
ccacgtaaatcatgaataatacccaaaccaaatataagtgatctg |
252 |
Q |
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| T |
29448704 |
ccacgtaaatcatgaataatacccaaaccaaatataagtgatctg |
29448748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 29456534 - 29456698
Alignment:
| Q |
104 |
cagctatccttaaaattcttaccatttctaatagtggctaacatccgccacatcaaatataagttaaattgttatgaacaaatgatgcagtga------- |
196 |
Q |
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| T |
29456534 |
cagctatccttaaaattcttaccatttctaatagtggctgacatctgccacatcaaatataagttaaattgttatgaacaaatgatgcagtgaaagggtt |
29456633 |
T |
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| Q |
197 |
---------aagtttgtgtcccacgtaaatcatgaataatacccaaaccaaatataagtgatctg |
252 |
Q |
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| T |
29456634 |
agacctctgaagtttgtgtcccacataaatcatgaataatacccaaaccaaacataagtgatctg |
29456698 |
T |
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