View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_high_2 (Length: 636)
Name: NF1864_high_2
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 447 - 620
Target Start/End: Original strand, 28850169 - 28850342
Alignment:
| Q |
447 |
atggaaagcaaaacatctttcctttgctggtagagtgacttttgctaaatcatttattgaagcagttcctatttatccgatgatgagttgtgttattcct |
546 |
Q |
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| T |
28850169 |
atggatagcaaaacatctttcctttgtcggttgagtgactcttgctaaatcagttattgaagcagtttttatttatccgatgatgagttgtgttattcct |
28850268 |
T |
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| Q |
547 |
aaatcgtatcttcatgagattcagaagttgcaaagaggttttatttggggtgatgatgaacagtgccgtcattt |
620 |
Q |
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| T |
28850269 |
aaatcgtgtctttatgagattcagaagttgcaaagagattttatttggggtgaggatgaacagcgccgacattt |
28850342 |
T |
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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 22824532 - 22824368
Alignment:
| Q |
1 |
aagaaaggcttgaggcaaggtgatcctatttcaccttatctttttgttatatgtatggataaactatctcatcttatttgtgagaaagtgaataacgggg |
100 |
Q |
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| T |
22824532 |
aagaaaggtttgaagcaaggtgatcctatttcaccttatctatttgttatatgcatggataaattgtcccatcttattagtgaggcagtcgatagaggtg |
22824433 |
T |
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| Q |
101 |
agtggattgccatgaaagcaggtagaaatggaccaattgtgtctcatttgatgtttgcagatgat |
165 |
Q |
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| T |
22824432 |
attggttggctttgaaagctggtagaacaggtccaatgatttctcatttgatgtttgctgatgat |
22824368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16858871 - 16858788
Alignment:
| Q |
1 |
aagaaaggcttgaggcaaggtgatcctatttcaccttatctttttgttatatgtatggataaactatctcatcttatttgtgag |
84 |
Q |
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| T |
16858871 |
aagaaaggtttgaggcaaggtgatcctatttcaccttatctattcgttatatgcatggataaattgtcccatcttattagtgag |
16858788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 54814335 - 54814285
Alignment:
| Q |
13 |
aggcaaggtgatcctatttcaccttatctttttgttatatgtatggataaa |
63 |
Q |
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| T |
54814335 |
aggcaaggggaccctctttccccttatctttttgttatttgtatggataaa |
54814285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 495
Target Start/End: Complemental strand, 21311199 - 21311110
Alignment:
| Q |
406 |
tttcagtatattattgatcaagtgagaaataaactggtgtcatggaaagcaaaacatctttcctttgctggtagagtgacttttgctaaa |
495 |
Q |
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| T |
21311199 |
tttcagtatattgttgatcaagtcagcaataagcttatggcctggaaagctaaacaactttcctttccagggagagttactttggctaaa |
21311110 |
T |
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