View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1864_high_21 (Length: 253)

Name: NF1864_high_21
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1864_high_21
NF1864_high_21
[»] chr5 (14 HSPs)
chr5 (124-242)||(13413337-13413455)
chr5 (136-242)||(13419682-13419788)
chr5 (136-242)||(13388959-13389065)
chr5 (140-242)||(13426573-13426675)
chr5 (140-242)||(13385142-13385244)
chr5 (134-242)||(13447233-13447341)
chr5 (4-58)||(33692251-33692305)
chr5 (9-59)||(35310301-35310351)
chr5 (146-222)||(13393376-13393452)
chr5 (4-59)||(13413520-13413575)
chr5 (164-249)||(13454179-13454264)
chr5 (4-56)||(13167109-13167161)
chr5 (4-59)||(2917560-2917615)
chr5 (4-53)||(27913489-27913538)
[»] chr6 (4 HSPs)
chr6 (4-59)||(17249504-17249559)
chr6 (4-59)||(33220910-33220965)
chr6 (4-59)||(7749334-7749389)
chr6 (4-39)||(45820-45855)
[»] chr1 (4 HSPs)
chr1 (4-59)||(5453948-5454003)
chr1 (4-52)||(868600-868648)
chr1 (4-51)||(30688418-30688465)
chr1 (4-59)||(34644419-34644474)
[»] chr4 (11 HSPs)
chr4 (140-242)||(47601504-47601606)
chr4 (4-59)||(3329849-3329904)
chr4 (4-51)||(50001125-50001172)
chr4 (4-51)||(4419125-4419172)
chr4 (4-51)||(31846964-31847011)
chr4 (4-49)||(39001260-39001305)
chr4 (4-59)||(53619439-53619494)
chr4 (13-59)||(48657121-48657167)
chr4 (4-59)||(23255566-23255621)
chr4 (8-59)||(41372271-41372322)
chr4 (4-58)||(55933659-55933713)
[»] chr3 (5 HSPs)
chr3 (4-58)||(26772612-26772666)
chr3 (4-39)||(32546668-32546703)
chr3 (4-59)||(38671079-38671134)
chr3 (2-52)||(8592001-8592051)
chr3 (1-39)||(53785582-53785620)
[»] chr7 (9 HSPs)
chr7 (8-59)||(38766177-38766228)
chr7 (4-59)||(38832155-38832210)
chr7 (9-50)||(40726684-40726725)
chr7 (4-59)||(36931901-36931956)
chr7 (4-51)||(45003096-45003143)
chr7 (6-59)||(5825126-5825179)
chr7 (11-59)||(28517493-28517541)
chr7 (4-51)||(2520920-2520967)
chr7 (4-39)||(25187130-25187165)
[»] chr8 (4 HSPs)
chr8 (1-58)||(44337194-44337250)
chr8 (4-47)||(38815159-38815202)
chr8 (14-59)||(42659080-42659125)
chr8 (4-59)||(39434522-39434575)
[»] chr2 (8 HSPs)
chr2 (4-59)||(28224853-28224908)
chr2 (4-59)||(38723991-38724046)
chr2 (6-51)||(27494172-27494217)
chr2 (7-51)||(41702133-41702177)
chr2 (4-39)||(3208443-3208478)
chr2 (4-51)||(10587154-10587201)
chr2 (6-52)||(2626048-2626094)
chr2 (4-52)||(4413265-4413313)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 13413455 - 13413337
Alignment:
Q  124 ctgtaattggtgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413455 ctgtaattggtgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgtt 13413356  T
Q  224 ggctacttgattgattcat 242  Q
    |||||||||||||||||||    
T  13413355 ggctacttgattgattcat 13413337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 13419788 - 13419682
Alignment:
Q  136 taataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgatt 235  Q
    |||||||| ||||||||| ||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| ||||| || ||| || ||    
T  13419788 taataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggtt 13419689  T
Q  236 gattcat 242  Q
    |||||||    
T  13419688 gattcat 13419682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 13388959 - 13389065
Alignment:
Q  136 taataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgatt 235  Q
    ||||||||||||||||||| |||  |||||||| ||| | || ||||||||||| || ||||| || ||||||||||||||||||||||||||| || ||    
T  13388959 taataaatacaggcatgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggtt 13389058  T
Q  236 gattcat 242  Q
    |||||||    
T  13389059 gattcat 13389065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 13426675 - 13426573
Alignment:
Q  140 aaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgatt 239  Q
    |||| ||||||||| ||||||||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| || || ||| || ||||||    
T  13426675 aaatgcaggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgatt 13426576  T
Q  240 cat 242  Q
    |||    
T  13426575 cat 13426573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 13385142 - 13385244
Alignment:
Q  140 aaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgatt 239  Q
    ||||||||||||||| |||  |||||||| ||| | || ||||||||||| || ||||| || ||||||||||||||||||||||||||| | |||||||    
T  13385142 aaatacaggcatgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgatt 13385241  T
Q  240 cat 242  Q
    |||    
T  13385242 cat 13385244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 13447341 - 13447233
Alignment:
Q  134 tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga 233  Q
    ||||||||||| ||||| || ||| ||||| |||||||||| || |||||||||||  | |||||||||||||||||||||||||| || || ||| ||     
T  13447341 tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg 13447242  T
Q  234 ttgattcat 242  Q
    |||||||||    
T  13447241 ttgattcat 13447233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 33692251 - 33692305
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgata 58  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  33692251 agcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaatattgata 33692305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 35310351 - 35310301
Alignment:
Q  9 cgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  35310351 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatag 35310301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 13393376 - 13393452
Alignment:
Q  146 aggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgt 222  Q
    ||||||||| |||| |||||||| || || |||||||||||||| |||||||| ||| ||||||||||||| |||||    
T  13393376 aggcatgagattgctggtatagtgacggaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgt 13393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 13413575 - 13413520
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  13413575 agcggtgcagcttgttgcccgcttgtctcctattgatgtgtaagtaattttgatag 13413520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 13454264 - 13454179
Alignment:
Q  164 atagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattcatctcactc 249  Q
    ||||| |||||||| |||||||||||| | ||||| ||||||||||||| ||||||||| || | |||| ||||||| | ||||||    
T  13454264 atagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactc 13454179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 13167109 - 13167161
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttga 56  Q
    |||||||||||||||||||| |||||||||||||||||| ||| |||| ||||    
T  13167109 agcggcgcagcttgttgcccacttgcctcctattcatgtgtaattaatattga 13167161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 2917560 - 2917615
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||| |||||||| ||||||||||||||||||| || ||||| |||||||    
T  2917560 agcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaatattgatag 2917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 27913538 - 27913489
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattt 53  Q
    |||||||||||||||||||||||||||| |||| | ||| ||| ||||||    
T  27913538 agcggcgcagcttgttgcccgcttgccttctatccttgtgtaaataattt 27913489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 17249504 - 17249559
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17249504 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatattgatag 17249559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 33220910 - 33220965
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  33220910 agcggcgcagcttgttggccgcttgcctcctattcatgtgtaagtaatattgatag 33220965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7749389 - 7749334
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  7749389 agcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaatattgatag 7749334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 45820 - 45855
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattca 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  45820 agcggcgcagcttgttgcccgcttgcctcctattca 45855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 5454003 - 5453948
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5454003 agcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatag 5453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 868600 - 868648
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatt 52  Q
    |||||||||||||||||||||||||||| ||||||| || ||| |||||    
T  868600 agcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataatt 868648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 30688465 - 30688418
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    |||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  30688465 agcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaat 30688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 34644474 - 34644419
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||| ||||||||||||| ||||||||| |||||||  |||| |||||||    
T  34644474 agcggcgcagtttgttgcccgcttacctcctatttatgtatatataatattgatag 34644419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 47601606 - 47601504
Alignment:
Q  140 aaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgatt 239  Q
    |||||||| |||||| |||  |||||||| ||| |||| ||||||||||| || ||||| ||||||||||||||||| |||||||||| | |||| ||||    
T  47601606 aaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagacaaagtgggtgttggcttcatgatcgatt 47601507  T
Q  240 cat 242  Q
    |||    
T  47601506 cat 47601504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 3329904 - 3329849
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  3329904 agcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaatattgatag 3329849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 50001125 - 50001172
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50001125 agcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 4419172 - 4419125
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    
T  4419172 agcggcgcagcttgttgcccgcttgcctcctattcatgtgcaagtaat 4419125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 31847011 - 31846964
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  31847011 agcggcgcaggttgttgcccgcttgcctcctattcatgtgtaagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 39001305 - 39001260
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagta 49  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  39001305 agcggcgcagtttgttgcccgcttgcctcctattcatgtgtaagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 53619494 - 53619439
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||||||||||||  ||| |||||||||||||| |||||||| |||||||    
T  53619494 agcggcgcagcttgttgcctacttacctcctattcatgtgtaagtaatattgatag 53619439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 48657121 - 48657167
Alignment:
Q  13 gcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||    
T  48657121 gcttgttgcctgcttggctcctattcatgtataagtaatattgatag 48657167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 23255621 - 23255566
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||| |||||| |||||||||||| | | |||||| |||||||    
T  23255621 agcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaatattgatag 23255566  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 41372271 - 41372322
Alignment:
Q  8 gcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||| ||||||| | ||||||||||||||||||| |||||||| |||||||    
T  41372271 gcgcaacttgttgtctgcttgcctcctattcatgtgtaagtaatattgatag 41372322  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 55933659 - 55933713
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgata 58  Q
    |||| ||||| |||||| |||||||||||||||||||||  ||||||| ||||||    
T  55933659 agcgacgcagtttgttgtccgcttgcctcctattcatgtgcaagtaatattgata 55933713  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 26772666 - 26772612
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgata 58  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  26772666 agcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgata 26772612  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 32546703 - 32546668
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattca 39  Q
    |||||||||||||||||||||||||||| |||||||    
T  32546703 agcggcgcagcttgttgcccgcttgccttctattca 32546668  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38671079 - 38671134
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||| |||||| ||||||||| |||| ||| |||| |||||||    
T  38671079 agcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataatattgatag 38671134  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 8592051 - 8592001
Alignment:
Q  2 ccagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatt 52  Q
    |||||||||||||||||| ||| |||||||  ||||||||| |||||||||    
T  8592051 ccagcggcgcagcttgttacccacttgccttatattcatgtgtaagtaatt 8592001  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 53785620 - 53785582
Alignment:
Q  1 tccagcggcgcagcttgttgcccgcttgcctcctattca 39  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  53785620 tccagcggcgtagcttgttgcccgcttgccttctattca 53785582  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 38766228 - 38766177
Alignment:
Q  8 gcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  38766228 gcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatag 38766177  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 38832210 - 38832155
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  38832210 agcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatag 38832155  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 40726684 - 40726725
Alignment:
Q  9 cgcagcttgttgcccgcttgcctcctattcatgtataagtaa 50  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  40726684 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 36931901 - 36931956
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||  ||||||||||||||||||| | |||||||| |||||||    
T  36931901 agcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatag 36931956  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 45003096 - 45003143
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  45003096 agcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaat 45003143  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 5825179 - 5825126
Alignment:
Q  6 cggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    |||||||||||||| || ||||||||||||||||||| |||| ||| |||||||    
T  5825179 cggcgcagcttgttacctgcttgcctcctattcatgtgtaagaaatattgatag 5825126  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 28517493 - 28517541
Alignment:
Q  11 cagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||  |||||||||||||||| |||||||| |||||||    
T  28517493 cagcttgttgcccgtctgcctcctattcatgtgtaagtaatattgatag 28517541  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 2520920 - 2520967
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||||||||||||| |||||||||| |||||||||| ||| ||||    
T  2520920 agcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2520967  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 25187130 - 25187165
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattca 39  Q
    |||||||||||||||||||||||||||| |||||||    
T  25187130 agcggcgcagcttgttgcccgcttgccttctattca 25187165  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44337250 - 44337194
Alignment:
Q  1 tccagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgata 58  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  44337250 tccagcggc-cagcttgttgctcgcttgcctcctattcatgtgtaagtaatattgata 44337194  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 38815202 - 38815159
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataag 47  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  38815202 agcggcgcagcttgttgcccgcttgccttctattcatgtgtaag 38815159  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 42659125 - 42659080
Alignment:
Q  14 cttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||| ||||||||||||||||| ||| |||||||| |||||||    
T  42659125 cttgttgtccgcttgcctcctattcttgtgtaagtaatattgatag 42659080  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 39434575 - 39434522
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||||||||  ||  ||||||||||||||| |||||||| |||||||    
T  39434575 agcggcgcagcttgttgctagc--gcctcctattcatgtgtaagtaatattgatag 39434522  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 28224908 - 28224853
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||||||||||| ||||||||||| ||||||||||| | |||||||| |||||||    
T  28224908 agcggcgcagcttattgcccgcttgtctcctattcatttgtaagtaatattgatag 28224853  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38723991 - 38724046
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaattttgatag 59  Q
    ||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||    
T  38723991 agcggtgcagcttgttgctcgcttgcctcctatttatgtgtaagtaatattgatag 38724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 27494217 - 27494172
Alignment:
Q  6 cggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||    
T  27494217 cggcgcagcttgttgcctgcttgcctcctattcatatgtaagtaat 27494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 41702177 - 41702133
Alignment:
Q  7 ggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  41702177 ggcgcagcttgttgcccacttgccttctattcatgtgtaagtaat 41702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 3208443 - 3208478
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattca 39  Q
    |||||||||||||||||||||||||||| |||||||    
T  3208443 agcggcgcagcttgttgcccgcttgccttctattca 3208478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 10587154 - 10587201
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 51  Q
    ||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  10587154 agcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaat 10587201  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2626048 - 2626094
Alignment:
Q  6 cggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatt 52  Q
    ||||||||||||||| |||||||||| |||||||||| ||| |||||    
T  2626048 cggcgcagcttgttgtccgcttgccttctattcatgtgtaattaatt 2626094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4413265 - 4413313
Alignment:
Q  4 agcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatt 52  Q
    |||||||||||||||||||| ||||||| ||||||| || ||| |||||    
T  4413265 agcggcgcagcttgttgcccacttgccttctattcaagtgtaaataatt 4413313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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