View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_high_27 (Length: 202)
Name: NF1864_high_27
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 31110336 - 31110506
Alignment:
| Q |
18 |
ggggtgtttttaagagcttattttggtgtatcttatgacataaaacacttatttaagtgattgagtttgaaagagcttctagaaatagcttatcaagtaa |
117 |
Q |
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| T |
31110336 |
ggggtgtttttaagagcttattttggtgtatcttatgacataaaacacttatttaagtgattgagtttgaaagagcttttagaaatagcttatcaagtaa |
31110435 |
T |
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| Q |
118 |
aaataagttgttttcaacttactttcataaactctcggatataacttttagaaacagcttgtgcaaagctt |
188 |
Q |
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| T |
31110436 |
aaataagttgttttcaacttactttcataaactctcggatataacttttagaaacagcttgtacaaagctt |
31110506 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 778448 - 778416
Alignment:
| Q |
121 |
taagttgttttcaacttactttcataaactctc |
153 |
Q |
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| T |
778448 |
taagttgttttcaacttactttcataagctctc |
778416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 24281107 - 24281074
Alignment:
| Q |
120 |
ataagttgttttcaacttactttcataaactctc |
153 |
Q |
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| T |
24281107 |
ataagttgttttcaacttactttcataagctctc |
24281074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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