View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1864_high_5 (Length: 503)

Name: NF1864_high_5
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1864_high_5
NF1864_high_5
[»] chr3 (35 HSPs)
chr3 (1-487)||(2659402-2659891)
chr3 (128-477)||(2501596-2501942)
chr3 (137-487)||(2644615-2644968)
chr3 (137-470)||(679502-679832)
chr3 (139-470)||(747420-747748)
chr3 (244-488)||(2476183-2476433)
chr3 (137-340)||(9595051-9595251)
chr3 (156-339)||(9562386-9562566)
chr3 (241-338)||(7443412-7443509)
chr3 (243-484)||(2474651-2474898)
chr3 (244-336)||(2630867-2630959)
chr3 (126-487)||(7324681-7325045)
chr3 (1-92)||(2501469-2501563)
chr3 (1-83)||(2475967-2476052)
chr3 (1-91)||(2644990-2645083)
chr3 (363-470)||(7443271-7443378)
chr3 (244-340)||(2635220-2635316)
chr3 (1-87)||(2491397-2491486)
chr3 (297-487)||(2491681-2491877)
chr3 (363-461)||(7334560-7334658)
chr3 (128-205)||(2630766-2630843)
chr3 (1-89)||(2630651-2630742)
chr3 (244-340)||(7334690-7334786)
chr3 (2-88)||(755291-755380)
chr3 (137-223)||(2491521-2491607)
chr3 (374-484)||(9562232-9562342)
chr3 (244-477)||(9566098-9566343)
chr3 (286-339)||(755025-755078)
chr3 (433-477)||(9594905-9594949)
chr3 (132-215)||(755167-755250)
chr3 (433-484)||(768615-768666)
chr3 (2-51)||(7443693-7443742)
chr3 (161-205)||(2476115-2476159)
chr3 (429-465)||(9608643-9608679)
chr3 (296-336)||(13497789-13497829)
[»] scaffold0097 (1 HSPs)
scaffold0097 (29-91)||(33999-34064)
[»] chr1 (2 HSPs)
chr1 (294-340)||(51829302-51829348)
chr1 (302-339)||(51381898-51381935)
[»] chr5 (1 HSPs)
chr5 (428-469)||(20292716-20292757)
[»] chr7 (1 HSPs)
chr7 (368-408)||(1421551-1421591)
[»] chr6 (1 HSPs)
chr6 (296-340)||(9820340-9820384)


Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 2659891 - 2659402
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatc---gtatgtcaaccaagcgccaccacctcatgctaacaaattcttgt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  2659891 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatcttcgtatgtcaaccaagcgccaccacctcatgctaacaaattcttgt 2659792  T
Q  98 gattatgattattattatgatcgtgacatagttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttaca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2659791 gattatgattattattatgatcgtgacatagttatgtgcgattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttaca 2659692  T
Q  198 ttcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttctt 297  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659691 ttcctaatactctcacaaatggacatcactgcatcgacctgatgatgagctcttgcgatggcatattttgtggtaagctcaataatggttcttatttctt 2659592  T
Q  298 gtggaacccttccattagaaagtttaagttattgcctcctttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattat 397  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659591 atggaacccttccattagaaagtttaagttattgcctcctttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattat 2659492  T
Q  398 aaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaagaatagcggacattccatattct 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2659491 aaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaagaataaaggacattccatattct 2659402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 128 - 477
Target Start/End: Original strand, 2501596 - 2501942
Alignment:
Q  128 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattact 227  Q
    |||||||  ||||| ||||||||||  | ||| ||||||||| | ||| ||||||||||||||||  ||||||||| |||||||||||||||| || |      
T  2501596 gttatgtatgattccccaatccctttgcctttttctacttctgcagttcttacacaaacacaactacacattcctagtactctcacaaatggaaatcatg 2501695  T
Q  228 gcat-cgacctgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagt 326  Q
    || | || |    |||| ||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  2501696 gcgtgcgtc----tgatttgctcttgcgatggcgtgttttgtggtcagctcaataatgattcttatttcttgtggaacccttccattacaaagtttaagt 2501791  T
Q  327 tattgcctcctttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagt 426  Q
    ||||||||||||||  ||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||  |||    ||||  | |||| |     
T  2501792 tattgcctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatga 2501891  T
Q  427 gattagtgttaatactttggggactgattattggagaagaatagcggacat 477  Q
      |||| |||||||||||||||||||||||||||||||  |||| ||||||    
T  2501892 agttagggttaatactttggggactgattattggagaaagatagaggacat 2501942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 137 - 487
Target Start/End: Complemental strand, 2644968 - 2644615
Alignment:
Q  137 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaata---ctctcacaaatggacattactgcatcg 233  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||| ||   |||||||||| ||||||  ||| || |    
T  2644968 gattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttcctactagtactctcacaaacggacatctctggatgg 2644869  T
Q  234 acctgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcc 333  Q
     |||| ||   ||||||||||| ||| | ||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2644868 gcctgctg---tgctcttgcgacggcgtgttttgtggtcagctcaatgatgattcttatttcttgtggaacccttccgttagaaagtttaagttattgcc 2644772  T
Q  334 tcctttgcggaatcacaa-atggtc--attactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgatt 430  Q
    |||||||   | ||||||  |  ||  |  ||||||||||||||||||||| ||  ||||||||||||||||  ||     ||||  | |||| |   ||    
T  2644771 tcctttggaaagtcacaattttatcagaacactaagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagtt 2644672  T
Q  431 agtgttaatactttggggactgattattggagaagaatagcggacattccatattct 487  Q
    || |||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  2644671 agggttaatactttggggactgattattggacaagaatacaggacattccatattct 2644615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 470
Target Start/End: Complemental strand, 679832 - 679502
Alignment:
Q  137 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacc 236  Q
    |||||||||||||| ||  |||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| |||| | ||  | |||   | |||     
T  679832 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtggacg 679733  T
Q  237 tgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 336  Q
    | |||   ||||||||||||||||| |||||  | | ||| ||   |||||||||||| |||||||| |||||| ||||||||| ||||||| | |||||    
T  679732 taatg---tgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttgttgtggaatccttccgttagaaagtataagttactccctcc 679636  T
Q  337 tttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgtt 436  Q
    ||||  |||||||| |||| ||| |||||||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || |||||    
T  679635 tttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgtt 679536  T
Q  437 aatactttggggactgattattggagaagaatag 470  Q
    ||||||||||||  ||||||||||| ||||||||    
T  679535 aatactttgggggatgattattggacaagaatag 679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 139 - 470
Target Start/End: Complemental strand, 747748 - 747420
Alignment:
Q  139 ttctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctg 238  Q
    |||||||||||| ||  |||| |||||||||| |||||||||||| ||||||||||||  |||||||||||| |||| | ||  | |||   | ||| |     
T  747748 ttctccaatcccctcggttttatctacttctatcgttgttacacatacacaactttaccctcctaatactcttacaattcgaggtaactttgtggacgta 747649  T
Q  239 atgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctt 338  Q
    |||   || |||||||||||||| |||||  | | ||| ||   |||||| ||||| |||||||| |||||||||||||||| || |||| | |||||||    
T  747648 atg---tgatcttgcgatggcatcttttgctgcatgctaaaagctggttcatatttgttgtggaatccttccattagaaagtatacgttacttcctcctt 747552  T
Q  339 tgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaa 438  Q
    ||  |||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||||    |||||   |||||| | ||  | ||||    
T  747551 tggagaatcacatatggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaa 747452  T
Q  439 tactttggggactgattattggagaagaatag 470  Q
    |||||||||| |||||||||||| ||||||||    
T  747451 tactttgggggctgattattggaaaagaatag 747420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 244 - 488
Target Start/End: Original strand, 2476183 - 2476433
Alignment:
Q  244 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttgcgg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||       
T  2476183 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaaatttcagctattgcctcctttgaaa 2476282  T
Q  344 aatcacaaatggtcattac-------taagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgtt 436  Q
    |||| || | |   |||||       |||||||||| |||||||||| ||||||||| || |||||  ||     ||||  |||||| |   ||||||||    
T  2476283 aatc-catacgaagattacttttccataagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgtt 2476381  T
Q  437 aatactttggggactgattattggagaagaatagcggacattccatattctt 488  Q
    ||||||||||||||||||||||||| ||||||   |||||| ||||||||||    
T  2476382 aatactttggggactgattattggacaagaatgcaggacatcccatattctt 2476433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 137 - 340
Target Start/End: Complemental strand, 9595251 - 9595051
Alignment:
Q  137 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacc 236  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||  | | | | | |||     
T  9595251 gattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaatacgtggacg 9595152  T
Q  237 tgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 336  Q
    | ||  ||||||||||||||||||| |||||| ||   |||||   |||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  9595151 t-at--tgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttattgcctcc 9595055  T
Q  337 tttg 340  Q
    ||||    
T  9595054 tttg 9595051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 339
Target Start/End: Complemental strand, 9562566 - 9562386
Alignment:
Q  156 ttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcga 255  Q
    |||| ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||||||  || | ||| |  |||||  |  ||||||| || |||    
T  9562566 ttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaaatccacgtaacttcc-cgaccgta--atgtgctgttccga 9562470  T
Q  256 tggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccttt 339  Q
     |||||| |||||||| ||||||||  |||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||    
T  9562469 aggcatactttgtggtcagctcaatcttggttcttattttttgtacaacccttccattagaaaatttaagttattgcctccttt 9562386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 7443509 - 7443412
Alignment:
Q  241 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctt 338  Q
    ||||||||||||||||||||||||||| ||| ||||||||  ||||| || |||  ||||||||||||||||| |||||||||||||||| |||||||    
T  7443509 gatgtgctcttgcgatggcatattttgcggtgagctcaatcttggttattgttttgtgtggaacccttccattcgaaagtttaagttattacctcctt 7443412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 243 - 484
Target Start/End: Original strand, 2474651 - 2474898
Alignment:
Q  243 tgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccttt-gc 341  Q
    |||||||||| |||||||| ||||| || | ||||||  |||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||| |     
T  2474651 tgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcctcctttgga 2474749  T
Q  342 ggaatcac-aaatggtc-----attactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgt 435  Q
      || ||| ||||||||     | || |||||||||||||||||||||| ||||||||||| ||||   |||    ||||| |||||| |   |||||||    
T  2474750 aaaaccacaaaatggtcccttgagta-taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgt 2474848  T
Q  436 taatac-tttggggactgattattggagaagaatagcggacattccatat 484  Q
    |||||| |||  ||||||||||||||| |||||||| |||||| ||||||    
T  2474849 taatacttttaaggactgattattggacaagaatagaggacatcccatat 2474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 2630867 - 2630959
Alignment:
Q  244 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 336  Q
    |||||||||||||||||| ||||  |||| | ||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2630867 gtgctcttgcgatggcatctttttgggtatgttctctcatacttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 2630959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 487
Target Start/End: Complemental strand, 7325045 - 7324681
Alignment:
Q  126 tagttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatta 225  Q
    |||||||||  ||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||  ||||| ||| |||||||||||||||||        
T  7325045 tagttatgtatgattccccaattccttcgcttttttctacttctgccgtttttacacaaacacaactacacatttctagtactctcacaaatggac---- 7324950  T
Q  226 ctgcatcgacctgatgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaag 325  Q
      | ||| ||      |  |||||||| |||||||| ||||  || | ||||||   |||||||||||  |||||||||||||||||||| || ||||||    
T  7324949 --gtatctacgccccaacatgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattaggaaatttaag 7324852  T
Q  326 ttattgcctcctttgcggaat-cac----aaatggtcattact----aagctttggatatgatcattttattgataattataaggttgttgcccattctt 416  Q
    ||||||||| | |||   ||| |||    | |||||  | |||     |||||||| || |||||||| |||||||| ||||||||  |||    |||||    
T  7324851 ttattgcctaccttggaaaatccacatgaacatggtgctaacttttgcagctttgggtacgatcatttaattgataactataaggtcattgttgtttctt 7324752  T
Q  417 tcaaaaaagtgattagtgttaatactttggggactgattattggagaagaatagcggacattccatattct 487  Q
     ||||||     ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||    
T  7324751 ccaaaaataaagttagtgttaatactttggggactgattattggacaagaatagaggacatcccatattct 7324681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2501469 - 2501563
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaacaaatt 92  Q
    ||||||||| ||||||||| | |||||||||||||| ||||||||||| ||   |||||||||||||||||||| | || |||||||||||||||    
T  2501469 ttgtaagttcttcaattctttaatttctgatcctaaattcgcaaagaaacatcttcgtatgtcaaccaagcgccgctacatcatgctaacaaatt 2501563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2475967 - 2476052
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgc 83  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||   ||   ||||||| |||||||||||||||||||    
T  2475967 ttgtaagtttttcaattctcttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgc 2476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2645083 - 2644990
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 91  Q
    ||||||||| ||||||||| | |||||||||||||| |||| |||||| ||   ||||||| ||||||| ||||||||||||||||||||||||    
T  2645083 ttgtaagttattcaattctttaatttctgatcctaaattcgtaaagaaacaccttcgtatggcaaccaaacgccaccacctcatgctaacaaat 2644990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 470
Target Start/End: Complemental strand, 7443378 - 7443271
Alignment:
Q  363 taagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggag 462  Q
    |||| ||||| ||||||||||| |||||||||||||| ||||||||   ||||| |||| | | | ||  ||||||| ||||||||||||||||||||||    
T  7443378 taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag 7443279  T
Q  463 aagaatag 470  Q
    ||||||||    
T  7443278 aagaatag 7443271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 2635220 - 2635316
Alignment:
Q  244 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 340  Q
    |||||||||||||||||| ||| | |||  ||||||   ||||||||||||  |||||||||||||||||||||| | |||||||||||| ||||||    
T  2635220 gtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaaatgtaagttattgccccctttg 2635316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2491397 - 2491486
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatcgt---atgtcaaccaagcgccaccacctcatgctaac 87  Q
    ||||||||||||||||||| | |||||||||||||| |||||||| ||||||| |    ||||||| |||||||||||||||||| ||||    
T  2491397 ttgtaagtttttcaattctttaatttctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaac 2491486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 297 - 487
Target Start/End: Original strand, 2491681 - 2491877
Alignment:
Q  297 tgtggaacccttccattagaaagtttaagttattgcctcctttgcggaat-cac----aaatggtcattac-taagctttggatatgatcattttattga 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||| |||    | ||| |  | |  |||||||||| ||||||||||| |||||    
T  2491681 tgtggaacccttccattagaaagtttaagttattgcctcctttggaaaattcacgcggacatgtttttcaaataagctttgggtatgatcatttcattga 2491780  T
Q  391 taattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaagaatagcggacattccatattct 487  Q
    | ||||||||||  |||    ||||| | |||| |   |||||||| |||||||||||||||||||||||| ||||||   |||||| |||||||||    
T  2491781 tgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaagaatcaaggacatcccatattct 2491877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 461
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
Q  363 taagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattgga 461  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||   |||| | ||||||    |||||||| |||||||||| |||||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 2630766 - 2630843
Alignment:
Q  128 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaat 205  Q
    |||||||  ||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||||||  |||||||    
T  2630766 gttatgtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2630651 - 2630742
Alignment:
Q  1 ttgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatcgt--at-gtcaaccaagcgccaccacctcatgctaacaa 89  Q
    ||||||||| |||||||| ||||||||||||||||| |||| ||||||||||| |  || |||||| ||||||| |||||| ||||||||||    
T  2630651 ttgtaagttcttcaattcacttatttctgatcctaaattcgtaaagaagcatcttcaatcgtcaactaagcgccgccaccttatgctaacaa 2630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 7334786 - 7334690
Alignment:
Q  244 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 340  Q
    ||||| |||||||||||| |||||  || | ||| | |||| ||||||||| |||||||||||||||||||  ||  ||||||||||||||||||||    
T  7334786 gtgctgttgcgatggcatcttttgctgttatctcgaaaatgattcttattttttgtggaacccttccattaacaaagttaagttattgcctcctttg 7334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 755380 - 755291
Alignment:
Q  2 tgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagcatcgt---atgtcaaccaagcgccaccacctcatgctaaca 88  Q
    ||||||| |||||||||||||||||||||||| || |||||||| || |||| |    ||||||| |||||||||||||||||| |||||    
T  755380 tgtaagtctttcaattctcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaaca 755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 2491521 - 2491607
Alignment:
Q  137 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacat 223  Q
    ||||| ||||| || || ||||| ||||||||||||||| ||||||| || |||||||||  ||||| || ||||||||||||||||    
T  2491521 gattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacat 2491607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 484
Target Start/End: Complemental strand, 9562342 - 9562232
Alignment:
Q  374 tatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaagaatagcgg 473  Q
    ||||||||||| |||||||||||||||||  |||    ||||  |||||| |   |||||||| ||||||||||||||||||||||||  ||||||| ||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  474 acattccatat 484  Q
    |||| ||||||    
T  9562242 acatcccatat 9562232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 477
Target Start/End: Complemental strand, 9566343 - 9566098
Alignment:
Q  244 gtgctcttgcgatggcatattttgtggtaagctcaataat---ggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 340  Q
    |||||||||||||||||| ||||||||| ||||||||  |   |||| |||||| |||||||||||||| ||||| || ||||||||||||||||||| |    
T  9566343 gtgctcttgcgatggcatcttttgtggtgagctcaatcttcttggttgttattttttgtggaacccttctattaggaaatttaagttattgcctccttcg 9566244  T
Q  341 cggaatcacaa--atggtcat-------tactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgatta 431  Q
     | |||  |    | ||||||       |  |||| ||||| ||||||||||| ||||||||||||||| |  || |   ||||   ||||| |   |||    
T  9566243 ggaaattcctgcgaaggtcatccgtttttcataagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagtta 9566144  T
Q  432 gtgttaatactttggggactgattattggagaagaatagcggacat 477  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||    
T  9566143 gtgtttatactttggggactgattattggacaagaatagaggacat 9566098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 755078 - 755025
Alignment:
Q  286 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccttt 339  Q
    ||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||    
T  755078 ttcttattttttgtggaatccttccattacaaaatttaagttattgcctccttt 755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 9594949 - 9594905
Alignment:
Q  433 tgttaatactttggggactgattattggagaagaatagcggacat 477  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||    
T  9594949 tgtttatactttggggactgattattggacaagaatagaggacat 9594905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 755250 - 755167
Alignment:
Q  132 tgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 215  Q
    |||| ||||| |||||||| ||  |||| ||||||||||| ||| ||||||| ||||||||||||  ||| |||||| ||||||    
T  755250 tgtgtgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaatactatcacaa 755167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 768666 - 768615
Alignment:
Q  433 tgttaatactttggggactgattattggagaagaatagcggacattccatat 484  Q
    |||| |||||||||| || ||||||||||||||||||| |||||| ||||||    
T  768666 tgtttatactttgggaacagattattggagaagaatagaggacatcccatat 768615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 7443742 - 7443693
Alignment:
Q  2 tgtaagtttttcaattctcttatttctgatcctaatttcgcaaagaagca 51  Q
    |||||||| ||||||||| | ||||||||||| |||||||| ||||||||    
T  7443742 tgtaagttcttcaattctttaatttctgatcccaatttcgccaagaagca 7443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 2476115 - 2476159
Alignment:
Q  161 tctacttctaccgttgttacacaaacacaactttacattcctaat 205  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||    
T  2476115 tctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 9608679 - 9608643
Alignment:
Q  429 ttagtgttaatactttggggactgattattggagaag 465  Q
    |||||||| |||||||||| |||||||||||||||||    
T  9608679 ttagtgttcatactttgggcactgattattggagaag 9608643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 13497789 - 13497829
Alignment:
Q  296 ttgtggaacccttccattagaaagtttaagttattgcctcc 336  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  13497789 ttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 33999 - 34064
Alignment:
Q  29 gatcctaatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 91  Q
    ||||| |||||||||||||| ||   || |||||||||||||| ||||||||||||| ||||||||    
T  33999 gatcccaatttcgcaaagaaacaccttcatatgtcaaccaagcaccaccacctcatgttaacaaat 34064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 51829302 - 51829348
Alignment:
Q  294 tcttgtggaacccttccattagaaagtttaagttattgcctcctttg 340  Q
    ||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  51829302 tcttgtgcaacccttccatcagaaaatttaagatattgcctcctttg 51829348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 51381935 - 51381898
Alignment:
Q  302 aacccttccattagaaagtttaagttattgcctccttt 339  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  51381935 aacccttccattagaaaatttaagatattgcctccttt 51381898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 20292716 - 20292757
Alignment:
Q  428 attagtgttaatactttggggactgattattggagaagaata 469  Q
    ||||||||| |||||||||| ||||| |||||||||||||||    
T  20292716 attagtgttcatactttgggtactgaatattggagaagaata 20292757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 1421591 - 1421551
Alignment:
Q  368 tttggatatgatcattttattgataattataaggttgttgc 408  Q
    ||||||||||||| ||| ||||||||||| |||||||||||    
T  1421591 tttggatatgatcctttcattgataattacaaggttgttgc 1421551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 9820384 - 9820340
Alignment:
Q  296 ttgtggaacccttccattagaaagtttaagttattgcctcctttg 340  Q
    ||||||||||||||||||||||| | |||  ||||||||||||||    
T  9820384 ttgtggaacccttccattagaaaatataacatattgcctcctttg 9820340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University