View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_high_9 (Length: 340)
Name: NF1864_high_9
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 47601382 - 47601709
Alignment:
| Q |
1 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca |
100 |
Q |
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| T |
47601382 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcaagattttca |
47601481 |
T |
|
| Q |
101 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601482 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcacta |
47601581 |
T |
|
| Q |
201 |
taccaacaatctcatgtctgtatttcttatactaattagaatcaaaataaagtaatggaaaaagctaag--aatttctaagataatggtg-agtagtagt |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || |
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| T |
47601582 |
taccaacaatctcatgtctgtatttcttatataaattagaatcaaaataaagtaatggaaaaagctaagacaatttctaagataatggtgaagtagtggt |
47601681 |
T |
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| Q |
298 |
gattttaattaaagcatacccaggaact |
325 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
47601682 |
gattttaattaaagcatacccaggaact |
47601709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 13389187 - 13388939
Alignment:
| Q |
1 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca |
100 |
Q |
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| T |
13389187 |
aaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaagtaaatgtgggacagtaattttcaagattgtca |
13389088 |
T |
|
| Q |
101 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcacta |
200 |
Q |
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| T |
13389087 |
acacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcacta |
13388988 |
T |
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| Q |
201 |
taccaacaatctcatgtctgtatttcttatactaattagaatcaaaata |
249 |
Q |
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|||||||||||||||| |||||||| ||||| |||||||||| ||||| |
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| T |
13388987 |
taccaacaatctcatgcctgtatttattatataaattagaatctaaata |
13388939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 13385280 - 13385121
Alignment:
| Q |
87 |
tttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc |
186 |
Q |
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|||| ||||| ||| |||||||||||||||||| |||||||| || ||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
13385280 |
tttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcc |
13385181 |
T |
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| Q |
187 |
cacttttgtcactataccaacaatctcatgtctgtatttcttatactaattagaatcaaa |
246 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
13385180 |
cacctttgtcactataccaacaatctcatgcctgtatttcttatataaattagaatcaaa |
13385121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13419560 - 13419745
Alignment:
| Q |
1 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca |
100 |
Q |
| |
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|||||||||||| ||||||||||| |||||| ||||||||||||||| || |||||||||||| ||||||| || || ||| | || |||| ||| |
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| T |
13419560 |
aaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtca |
13419659 |
T |
|
| Q |
101 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc |
186 |
Q |
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||||||||||| || || | |||||||| | |||| | || ||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
13419660 |
gcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttcc |
13419745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13413215 - 13413452
Alignment:
| Q |
1 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca |
100 |
Q |
| |
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|||||||||||| ||||||||||| || ||| ||| ||||||||||| ||||||||||||||| || ||| || || ||| | || ||||| ||| |
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| T |
13413215 |
aaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtca |
13413314 |
T |
|
| Q |
101 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcacta |
200 |
Q |
| |
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||||| ||| || |||| |||||||| |||| | |||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||| ||| |||| |
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| T |
13413315 |
ttacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccactttgcttcctacttctgttacta |
13413414 |
T |
|
| Q |
201 |
taccaacaatctcatgtctgtatttcttatactaatta |
238 |
Q |
| |
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|||| ||| |||||| |||||||| ||| || ||||| |
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| T |
13413415 |
tacccgcaagctcatgcctgtatttattacaccaatta |
13413452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 13393452 - 13393379
Alignment:
| Q |
143 |
acacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatg |
216 |
Q |
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||||||||||| ||||||| ||||||||| |||||||||||||| || | |||||||||||| |||||||||| |
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| T |
13393452 |
acacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatg |
13393379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 13454218 - 13454283
Alignment:
| Q |
155 |
tctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctg |
220 |
Q |
| |
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| T |
13454218 |
tctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctg |
13454283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13426451 - 13426636
Alignment:
| Q |
1 |
aaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttca |
100 |
Q |
| |
|
|||||||||||| || |||||||| |||||| | ||||||||||||| || ||||||||||| |||| | || || ||| | || |||| ||| |
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| T |
13426451 |
aaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttcc |
13426550 |
T |
|
| Q |
101 |
gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc |
186 |
Q |
| |
|
|||||||||| || || | |||||||| | |||| | || || || ||||| ||||||||||| |||||||||||||||||||| |
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| T |
13426551 |
gcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttcc |
13426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 13447259 - 13447299
Alignment:
| Q |
149 |
actttatctccaactttgaacttttctactttgcttcccac |
189 |
Q |
| |
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||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
13447259 |
actttgtctccaactttaaacttttttactttgcttcccac |
13447299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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