View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_1 (Length: 901)
Name: NF1864_low_1
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 789; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 18 - 889
Target Start/End: Complemental strand, 12418869 - 12417999
Alignment:
| Q |
18 |
aataccaactaaggttccaacacataccattacaagtatcataatggagaatcatagttttttatcgagtgaattttgggaacctttggattttctgcat |
117 |
Q |
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| T |
12418869 |
aataccaactaaggttccaacacataccattacaagtatcataatggagaatcatagttttttatcgagtgaattttgggaacctttggattttctgcat |
12418770 |
T |
|
| Q |
118 |
aattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtct |
217 |
Q |
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| T |
12418769 |
aattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtct |
12418670 |
T |
|
| Q |
218 |
tgaaccttgatagtgaaggttaaaactaattaaaacatgaaattgtgactattcaacaccatgccaaatcaagnnnnnnngcttagtgggaaaccttaaa |
317 |
Q |
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| T |
12418669 |
tgaatcttgatagtgaaggttaaaactaattaaaacatgaaattgtgactattcaacaccatgccaaatcaagtttttttgcttagtgagaaaccttaaa |
12418570 |
T |
|
| Q |
318 |
cctttttaattatctatatttcaaaagttttaacaccaagtcccacattgactgatgtgcattcaagtttttatgcatnnnnnnnnnntaccacttgttg |
417 |
Q |
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| T |
12418569 |
cctttttaattatctatatttcaaaagttttaacaccaagtccaacattgactgatgtgcattcaagtttttatgcataaaaaaaaaataccacttgttg |
12418470 |
T |
|
| Q |
418 |
aatctaaaggtcttttggaggttgaaatatggtaaaatttcctctattttttctgcaggaaaattttgtaaaccagttctatttgaattaatcatgcatt |
517 |
Q |
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| T |
12418469 |
aatctaaaggtcttttggaggttcaa-tatggtaaaatttcctctattttttctgcaggaaaattttgtaaaccagttctatttgaattaatcatgcatt |
12418371 |
T |
|
| Q |
518 |
tttctatactgatgtcttggatacgctaaaacaggcatgtattcaaatgtatgttaggatgtttcctattatgtgttgttgattggtgtttgagattata |
617 |
Q |
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| T |
12418370 |
tttctatactgatgtcttggataagctaaaacaggcatgtattcaaatgtatgttaggatgtttcctattatgtgttgttgattggtgtttgagattata |
12418271 |
T |
|
| Q |
618 |
tggctgctagctatattttattcatgtggttgataccttgtgtgccttgtttaaaattgaatgtaccttgtctgccttatatagtataagatgtagattt |
717 |
Q |
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| T |
12418270 |
tggctgctagctatattttattcatgtggttgataccttgtgtgccttgtttaatattgaatgtaccttgtctgccttatatagtataagatgtagattt |
12418171 |
T |
|
| Q |
718 |
taaaacttcgattaaatagctatgtcaaaaagtacatggcatggagtttaagaacctaatatgggattaggggttcctaatttaaatattcaaagggaat |
817 |
Q |
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| T |
12418170 |
taaaacttcgattaaatagctatgtcaaaaagtacatggcatggagtttaagaacctaatatgggattaggggttcctaatttaaatattcaaagggaat |
12418071 |
T |
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| Q |
818 |
tgaaaggcctaaattaggaaatataaaattcaatcaagtagtccttcttatctttcgtcctagttatatatt |
889 |
Q |
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| T |
12418070 |
tgaaaggcctaaattaggaaatataaaattcaatcaagtagtccttcttatctttcgtcctagttatatatt |
12417999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 12654794 - 12654848
Alignment:
| Q |
139 |
tgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaagga |
193 |
Q |
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|||||||||| |||||||||||||| ||| || |||||||||||| |||||||| |
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| T |
12654794 |
tgaacaagtttgttattagcttaggtacatggagagtttatagaacattgaagga |
12654848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 15329118 - 15329011
Alignment:
| Q |
109 |
tttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaaggaagcaaaagtattaaa |
208 |
Q |
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|||||||||||||||| ||||| || |||||| |||||| ||||||||||||| |||| || |||||||||||| |||||||||||||||||||| |
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| T |
15329118 |
tttctgcataattatgtagaaaaat--gtgtgatcaagtttgttattagcttagtcacatggagagtttatagaaaggggaaggaagcaaaagtattaag |
15329021 |
T |
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| Q |
209 |
aaagggtctt |
218 |
Q |
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|||| ||||| |
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| T |
15329020 |
aaagagtctt |
15329011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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