View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1864_low_11 (Length: 327)
Name: NF1864_low_11
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 38931639 - 38931329
Alignment:
| Q |
17 |
atcactggtagaaagtgcagcttttacattgccattctcctgcaattcatcatctgaaaaagttaataaacaaaataaaagtctcactgaattcatcttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931639 |
atcactggtagaaagtgcagcttttacattgccattctcctgcaattcatcatctgaaaaagttaataaacaaaataaaagtctcactgaattcatcttc |
38931540 |
T |
|
| Q |
117 |
aattgattttaaaatatatgtatagaaatgtaggaacattacaacaagtttgtagccatatctgaattcagtagccgactttagtacacggtgttgtttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931539 |
aattgattttaaaatatatgtatagaaatgtaggaacattacaacaagtttgtagccatatctgaattcagtagccgactttagtacacggtgttgtttg |
38931440 |
T |
|
| Q |
217 |
aatgcagatttctggatctccttctcatcctatttgaattgaagcaagcagtgagtaacaaagacaggaccaacatacataaccaagcaaacaaatcctc |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38931439 |
aatgcagatttctgtatctccttctcatcctatttgaattgaagcaagcagtgagtaacaaagacaggaccaacatacataaccaagaaaacaaatcctc |
38931340 |
T |
|
| Q |
317 |
agcgtgatgaa |
327 |
Q |
| |
|
||||||||||| |
|
|
| T |
38931339 |
agcgtgatgaa |
38931329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University