View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_14 (Length: 286)
Name: NF1864_low_14
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 12019986 - 12019732
Alignment:
| Q |
18 |
aacatttgatatgttgagacacatattcgaactcgggtcgggattctctatttctctgcacttaagatgtgtgattctcaccattagactatttaacnnn |
117 |
Q |
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| T |
12019986 |
aacatttgatatgttgcgacacatattcaaactcggg-----attctctatttctctgcacttaagatgtgtgactctcaccattagactatttaaaaaa |
12019892 |
T |
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| Q |
118 |
nnnn--taattactctaaaatctacatgtcaaaactatgaaatctgatattcaaccatggtttctagaatagtttttatcacactctatctctaatacta |
215 |
Q |
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| T |
12019891 |
aaataataattactctaaaatctacatgtcaaaactatgaaatctgatattcaaccatggtttctagaatagttgttatcacactctatctctaatacta |
12019792 |
T |
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| Q |
216 |
tccttcattatcttatcttgtcaggtatttttatacatccaacatagaattctcgccttt |
275 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12019791 |
tccttcataatcttatcttgtctagtatttttatacatccaacatagaattctcgccttt |
12019732 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 13172166 - 13172138
Alignment:
| Q |
19 |
acatttgatatgttgagacacatattcga |
47 |
Q |
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| T |
13172166 |
acatttgatatgttgagacacatattcga |
13172138 |
T |
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