View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_16 (Length: 274)
Name: NF1864_low_16
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 32168725 - 32168459
Alignment:
| Q |
1 |
taaaattttcccaaaaaatagatgaaaacgattttatacatgtaccatcattttaatttcctgataaatcctnnnnnnnnnnnnnnnnnntgtttatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32168725 |
taaaattttcccaaaaaatagatgaaaacgattttatacatgtaccatcattttaatttcctgataaatcctaaaaaaaatccaaaaaaatgtttatatt |
32168626 |
T |
|
| Q |
101 |
actcatctttaattataaaaattatatgaagtttatttctctttcttttgttccacgtaaaaagatttttctctttgaccaaacttttgatgaagtgcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
32168625 |
actcatctttaattataaaaattatatgaagtttatttctctttcttttgttccacgtaaaaagattttgctctttgaccaaacttttgataaagtgcta |
32168526 |
T |
|
| Q |
201 |
ttttcagaaacattccaattatctttaccatttctttttcggttttattggtttaagctctctgctc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32168525 |
ttttcagaaacattccaattatctttaccatttctttttcggtttcattggtttaagctctctgctc |
32168459 |
T |
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