View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1864_low_17 (Length: 274)

Name: NF1864_low_17
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1864_low_17
NF1864_low_17
[»] chr3 (17 HSPs)
chr3 (10-256)||(2659858-2660104)
chr3 (25-189)||(2501326-2501487)
chr3 (25-193)||(2491253-2491415)
chr3 (25-233)||(2645065-2645270)
chr3 (25-193)||(9562694-9562856)
chr3 (15-125)||(7334992-7335102)
chr3 (25-154)||(7443725-7443854)
chr3 (10-125)||(2475885-2476000)
chr3 (25-171)||(7325128-7325274)
chr3 (10-114)||(13497426-13497530)
chr3 (10-115)||(2630579-2630684)
chr3 (25-116)||(2474354-2474445)
chr3 (15-101)||(755353-755439)
chr3 (15-125)||(9566543-9566653)
chr3 (15-130)||(9595347-9595462)
chr3 (15-116)||(7398893-7398994)
chr3 (20-96)||(747851-747927)
[»] scaffold0097 (1 HSPs)
scaffold0097 (35-233)||(33784-33979)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 2659858 - 2660104
Alignment:
Q  10 aggagcagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 109  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659858 aggatcagaaataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 2659957  T
Q  110 ggaagagatggaagctccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccaccacgagtgattcagaag 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2659958 ggaagagctggaagctccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccaccacgagtgagtcagaag 2660057  T
Q  210 aatcgacggcatttcggttgtcgtcacctttgtttccttgcgccatt 256  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  2660058 aatcgacggcgtttcggttgtcctcaccttcgtttccttgcgccatt 2660104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 2501487 - 2501326
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||| ||| |||||| ||||||     
T  2501487 agaattgaagaacttacaaaggcatcgaagctgtactagtaatttcaccggaagcctgcacagaatctcaggcaaaagatcgaaaagaagagttggaagt 2501388  T
Q  125 tccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttc 189  Q
    ||| |   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2501387 tccag---cggtgggcatgttagggttccggcgaccaatcgctgcctctgagtgttggttgtttc 2501326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 2491415 - 2491253
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  2491415 agaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaagc 2491316  T
Q  125 tccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccacc 193  Q
    |||||    |||||||||||||||||||||| ||   |||| | | |||||||| ||||||||||||||    
T  2491315 tccgg---tggtgggcatgttagggttccggtgg---atcgattcttctgagtggtggttgtttccacc 2491253  T

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Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 2645065 - 2645270
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    ||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||    
T  2645065 agaattgaataacttacaaacgtatcgaagctgtataagtaatttcaccggaagcctacaaagaatctcaggaaggagatcaacaggaagagttggaagc 2645164  T
Q  125 tccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccaccacgagtgattcagaagaatcgacggcatttc 224  Q
    ||| |   ||||| | || |||||||||||||| |||||||| |||| |||||||||||||||||| ||   ||||| | |||| || ||||| | ||||    
T  2645165 tccag---cggtgtgtattttagggttccggcgaccaatcgccgcctttgagtgttggttgtttcctccgtaagtgactgagaacaaacgacgtcgtttc 2645261  T
Q  225 ggttgtcgt 233  Q
    |||||||||    
T  2645262 ggttgtcgt 2645270  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 9562694 - 9562856
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    ||||||||| |||| ||| |  |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||    
T  9562694 agaattgaagaactcacacagacatcgaagctgtacaagtaatttcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagttggaagc 9562793  T
Q  125 tccggctccggtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccacc 193  Q
    |||||    |||||||||||||||||||||| ||   |||||| |||||||||| ||||||||||||||    
T  9562794 tccgg---tggtgggcatgttagggttccggtgg---atcgcttcctctgagtggtggttgtttccacc 9562856  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 7334992 - 7335102
Alignment:
Q  15 cagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaag 114  Q
    ||||||||| |||||| || |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  7334992 cagagataacagaattaaagaacttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 7335091  T
Q  115 agatggaagct 125  Q
    ||  |||||||    
T  7335092 agtaggaagct 7335102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 7443725 - 7443854
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    ||||||||| |||||||| | ||| ||||| |||| |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||  ||||||    
T  7443725 agaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaagc 7443824  T
Q  125 tccggctccggtgggcatgttagggttccg 154  Q
    ||||||||||||||| ||||||||||||||    
T  7443825 tccggctccggtgggtatgttagggttccg 7443854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 2476000 - 2475885
Alignment:
Q  10 aggagcagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 109  Q
    |||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| || || | |||| |||||||||||||||||| ||||||     
T  2476000 aggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaag 2475901  T
Q  110 ggaagagatggaagct 125  Q
    |||||||  |||||||    
T  2475900 ggaagagtgggaagct 2475885  T

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Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 7325128 - 7325274
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagc 124  Q
    ||||||||| |||||||| | ||| |||||||||| |||||||||||| |||||||| || ||||||||||| | || ||| |||||||||| |||||||    
T  7325128 agaattgaagaacttacagaggcaccgaagctgtatgagtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaagc 7325227  T
Q  125 tccggctccggtgggcatgttagggttccggcggccaatcgctgcct 171  Q
    || |||   ||| || |||||||||||||||||  |||||| |||||    
T  7325228 tctggccgtggttggaatgttagggttccggcgatcaatcgttgcct 7325274  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 13497530 - 13497426
Alignment:
Q  10 aggagcagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 109  Q
    |||| ||||||| | |||||| |||||||| || | ||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||     
T  13497530 aggatcagagatcaaagaattaaaaaacttgcagaggcatcgaagttgtacaagtaacttcaccggaagcctacaaaggatctcaggcaggagatcaaat 13497431  T
Q  110 ggaag 114  Q
    |||||    
T  13497430 ggaag 13497426  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 2630684 - 2630579
Alignment:
Q  10 aggagcagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 109  Q
    |||| |||| ||||| |||||||| |||||||||| ||| |||||||| ||||||||||||||||||||| |||| ||||| |||| ||| | ||||||     
T  2630684 aggatcagaaataagtgaattgaagaacttacaaaggcaccgaagctgcacgagtaatttcaccggaagcatacagagaatgtcagtcagaacatcaaac 2630585  T
Q  110 ggaaga 115  Q
    ||||||    
T  2630584 ggaaga 2630579  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 2474445 - 2474354
Alignment:
Q  25 agaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagag 116  Q
    |||||| || |||||||| | ||| |||||||||||  ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||    
T  2474445 agaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagag 2474354  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 755353 - 755439
Alignment:
Q  15 cagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcagga 101  Q
    |||| ||||||||||||||| ||||||| | ||| || |||||| |||||||||| |  ||||||||||| ||||||||||||||||    
T  755353 cagaaataagagaattgaaagacttacagaggcaccgcagctgtccgagtaatttgatgggaagcctacaaagaatctcaggcagga 755439  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 9566543 - 9566653
Alignment:
Q  15 cagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaag 114  Q
    |||| ||||||||||||||  |||| || | ||| ||||||||| ||||||||||||  ||||||||||| ||||||||||||| || ||| || |||||    
T  9566543 cagaaataagagaattgaaggacttgcagaggcaccgaagctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaag 9566642  T
Q  115 agatggaagct 125  Q
    ||  |||||||    
T  9566643 agtaggaagct 9566653  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 9595347 - 9595462
Alignment:
Q  15 cagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaag 114  Q
    |||| ||||||||||  || |||||||| ||||||||||| || | ||| || ||||| |||||||| || ||||| ||||  |  ||||| ||||||||    
T  9595347 cagaaataagagaatgaaagaacttacatacgcatcgaagttgaaagagaaacttcacaggaagcctgcatagaatttcagcaattagatcgaaaggaag 9595446  T
Q  115 agatggaagctccggc 130  Q
    || |||||||||||||    
T  9595447 agttggaagctccggc 9595462  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 7398893 - 7398994
Alignment:
Q  15 cagagataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaag 114  Q
    |||||||||| | |||||| |||||||| | ||||||||| || | ||| |  ||||| || ||||||||||||||||| | ||||||||| || |||||    
T  7398893 cagagataagggtattgaagaacttacagaggcatcgaagttgaaggagaagcttcactgggagcctacacagaatctctgacaggagatctaatggaag 7398992  T
Q  115 ag 116  Q
    ||    
T  7398993 ag 7398994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 747851 - 747927
Alignment:
Q  20 ataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcagg 96  Q
    ||||||||||  ||||||||||| | ||||||||| |||||||||||||| |  ||||||||||  |||| ||||||    
T  747851 ataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagg 747927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 33979 - 33784
Alignment:
Q  35 aacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagatggaagctccggctccg 134  Q
    |||||||| | |||||| || |||| ||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||   ||    
T  33979 aacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagttggaagctccgg---cg 33883  T
Q  135 gtgggcatgttagggttccggcggccaatcgctgcctctgagtgttggttgtttccaccacgagtgattcagaagaatcgacggcatttcggttgtcgt 233  Q
    ||||| ||||||||||||||| |||||||||||| || ||||| |||||||||||| ||   ||||| | |||| || ||||| | |||||||||||||    
T  33882 gtgggtatgttagggttccggtggccaatcgctgtctttgagtattggttgtttcctccgttagtgactgagaataaacgacgtcgtttcggttgtcgt 33784  T

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