View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_21 (Length: 258)
Name: NF1864_low_21
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5022106 - 5022352
Alignment:
| Q |
1 |
ctggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatga |
100 |
Q |
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| T |
5022106 |
ctggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatga |
5022205 |
T |
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| Q |
101 |
acaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaactgaaacttgaagtggactctgaagaaaaaccgagt |
200 |
Q |
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| T |
5022206 |
acaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaacggaaacttgaagtggactctgaagaaaaaccgagt |
5022305 |
T |
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| Q |
201 |
tcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtata |
247 |
Q |
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| T |
5022306 |
tcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtata |
5022352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 5019430 - 5019511
Alignment:
| Q |
42 |
cgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatc |
123 |
Q |
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| T |
5019430 |
cgtataatcattgcttgttgtgttttgcataactttcttatggaagttgacattgacgaacaaatgattgctgaagtagatc |
5019511 |
T |
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