View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_24 (Length: 236)
Name: NF1864_low_24
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_24 |
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| [»] scaffold1572 (1 HSPs) |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 21318451 - 21318592
Alignment:
| Q |
81 |
ttagagagttactattatgcccat--ggatattcaacttctgtgcattctcaaggctttattccaaaggtcttgctctgttaaggttttgctcattttga |
178 |
Q |
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| T |
21318451 |
ttagagagttactattatgcccatatggatattcaacttctgtgcattctcaaggctttattccataggtcttgttctgttaaggtttggttcattttga |
21318550 |
T |
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| Q |
179 |
tttctttttgtaattatatgttttgaatcataacctattatg |
220 |
Q |
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| T |
21318551 |
tttctttttgtaattatatgttttgaatcataacctattatg |
21318592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 3854431 - 3854528
Alignment:
| Q |
19 |
tctattcaagagtttatcattctcaaagcttttaaagttactaacttctgtgtatttgatgcttagagagttactattatgcccatggatattcaactt |
117 |
Q |
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| T |
3854431 |
tctattcgagagtttgtcattatcaaggcttttaaagttcttaacttctgcggcattgacgctaagagagttactattatg-caaaggatattcaactt |
3854528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 3930002 - 3929962
Alignment:
| Q |
77 |
atgcttagagagttactattatgcccatggatattcaactt |
117 |
Q |
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| T |
3930002 |
atgctaagagagttactattatgccgaaggatattcaactt |
3929962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 21317661 - 21317701
Alignment:
| Q |
77 |
atgcttagagagttactattatgcccatggatattcaactt |
117 |
Q |
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| T |
21317661 |
atgctaagagagttactattatgcctaaggatattcaactt |
21317701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 1632 - 1547
Alignment:
| Q |
135 |
tttattccaaaggtcttgctctgttaaggttttgctcattttgatttctttttgtaattatatgttttgaatcataacctattatg |
220 |
Q |
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| T |
1632 |
tttattccataggtcttgttctgttaaggtttggttcattttgatttctttttgtaattatatgttttgaatcataacctattatg |
1547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 31098 - 31138
Alignment:
| Q |
77 |
atgcttagagagttactattatgcccatggatattcaactt |
117 |
Q |
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| T |
31098 |
atgctaagagagttactattatgcctaaggatattcaactt |
31138 |
T |
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