View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1864_low_25 (Length: 224)
Name: NF1864_low_25
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 41567101 - 41567207
Alignment:
| Q |
53 |
taagattttgttgaatctcatgtttgccaagagaggtttttcaattcttccctaaagcttcttacggtagaccaagaaataacctcctttttatagagat |
152 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41567101 |
taagattttgttgaatctcaagtttgccaagagaggtttttcaattcttccctaaagcttcttacggtagaccaagaaataacctcctttttatagagat |
41567200 |
T |
|
| Q |
153 |
tcatgac |
159 |
Q |
| |
|
||||||| |
|
|
| T |
41567201 |
tcatgac |
41567207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 41434411 - 41434313
Alignment:
| Q |
58 |
ttttgttgaatctcatgtttgccaagagaggtttttcaattcttccctaaagcttcttacggtagaccaagaaataacctcctttttatagagattcatg |
157 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41434411 |
ttttgttgaatctcatgtttaccaagagaggtttttcaattcttacctaaag---cttacggtagaccaagaaataacctcctttttataaagattcatg |
41434315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University