View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_26 (Length: 223)
Name: NF1864_low_26
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_26 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 13413142 - 13413357
Alignment:
| Q |
8 |
cagcacagaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccata |
107 |
Q |
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| T |
13413142 |
cagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccata |
13413241 |
T |
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| Q |
108 |
tgtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaa |
207 |
Q |
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| T |
13413242 |
agtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaa |
13413341 |
T |
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| Q |
208 |
tcaatcaagtagccaa |
223 |
Q |
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| T |
13413342 |
tcaatcaagtagccaa |
13413357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 13419513 - 13419690
Alignment:
| Q |
34 |
tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatacttgg |
133 |
Q |
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| T |
13419513 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttg |
13419612 |
T |
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| Q |
134 |
caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaa |
211 |
Q |
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| T |
13419613 |
caccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaa |
13419690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 13426389 - 13426581
Alignment:
| Q |
19 |
agaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttc |
118 |
Q |
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| T |
13426389 |
agaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgc |
13426488 |
T |
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| Q |
119 |
catcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaa |
211 |
Q |
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| T |
13426489 |
catcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaa |
13426581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 13389219 - 13389045
Alignment:
| Q |
49 |
tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatacttggcaccacatgtgacta |
148 |
Q |
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| T |
13389219 |
tcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaag |
13389120 |
T |
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| Q |
149 |
caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaa |
223 |
Q |
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| T |
13389119 |
taaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaa |
13389045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 13447064 - 13447161
Alignment:
| Q |
34 |
tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatactt |
131 |
Q |
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| T |
13447064 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt |
13447161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 13393665 - 13393551
Alignment:
| Q |
10 |
gcacagaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatg |
109 |
Q |
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| T |
13393665 |
gcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatg |
13393566 |
T |
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| Q |
110 |
tgacggttccatcac |
124 |
Q |
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| T |
13393565 |
tgatgcttccatcac |
13393551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 13454035 - 13454199
Alignment:
| Q |
52 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatacttggcaccacatgtgactacaa |
151 |
Q |
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|||||||||| ||||||||||||||| | |||||||||||||||| | ||||||| ||| ||||||||||| || |||| |||| |||| | | |
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| T |
13454035 |
ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtca |
13454134 |
T |
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| Q |
152 |
atttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaag |
216 |
Q |
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| T |
13454135 |
attggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaag |
13454199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 13385291 - 13385224
Alignment:
| Q |
156 |
ggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaa |
223 |
Q |
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| T |
13385291 |
ggggcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaa |
13385224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 13373270 - 13373366
Alignment:
| Q |
49 |
tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatacttggcaccacatgtga |
145 |
Q |
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| T |
13373270 |
tcaggaatacggatcacgaagtgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtga |
13373366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 47601353 - 47601445
Alignment:
| Q |
52 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcagagtaacctccatatgtgacggttccatcacgatacttggcaccacatgtg |
144 |
Q |
| |
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| T |
47601353 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtg |
47601445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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