View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1864_low_28 (Length: 204)

Name: NF1864_low_28
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1864_low_28
NF1864_low_28
[»] chr4 (1 HSPs)
chr4 (1-186)||(47601047-47601232)
[»] chr5 (10 HSPs)
chr5 (5-175)||(13385520-13385691)
chr5 (1-159)||(13393744-13393902)
chr5 (5-175)||(13389341-13389511)
chr5 (1-134)||(13412932-13413065)
chr5 (1-114)||(13419297-13419410)
chr5 (1-114)||(13446848-13446961)
chr5 (1-114)||(13426188-13426301)
chr5 (1-132)||(13453783-13453914)
chr5 (8-118)||(13373035-13373145)
chr5 (8-117)||(13378832-13378941)
[»] chr8 (1 HSPs)
chr8 (1-79)||(28430720-28430798)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 47601232 - 47601047
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47601232 tggacttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 47601133  T
Q  101 ttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaatagttcaatattctaatattcttaaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  47601132 ttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaatagttaaacattctaatattcttaaa 47601047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 13385520 - 13385691
Alignment:
Q  5 cttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttag 104  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||| ||||||| ||||  |||||    
T  13385520 cttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttag 13385619  T
Q  105 gagctgactcatttttgataagtcgtgaccaagataagatgcaagta-taaatacaatagttcaatattcta 175  Q
    ||||||| |||||| |||||||||||||||||||||| ||||| |||  ||| | |||||||||||||||||    
T  13385620 gagctgattcatttctgataagtcgtgaccaagataaaatgcaggtacaaaaaaaaatagttcaatattcta 13385691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 13393744 - 13393902
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    ||||||||||||| ||| ||| |||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||| |||||||||| ||||  |    
T  13393744 tggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaac 13393843  T
Q  101 ttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaataca 159  Q
     |||||||||| |||||| | ||||||| |||||||||||| ||||| ||| |||||||    
T  13393844 ctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaataca 13393902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 13389341 - 13389511
Alignment:
Q  5 cttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttag 104  Q
    ||||||||||||||||| || ||||| ||||| |||||||| | ||| || || |||||||||||||| |||||||| |||||||||| ||||  |||||    
T  13389341 cttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttag 13389440  T
Q  105 gagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaatagttcaatattcta 175  Q
    |||| || |||||| ||||||||||||||||||| || ||||| ||| ||| | ||| ||||||| |||||    
T  13389441 gagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaaaaaaattgttcaattttcta 13389511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 13413065 - 13412932
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    ||||||||| || |||||||| || ||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||| ||||  |    
T  13413065 tggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagcaatagaacac 13412966  T
Q  101 ttaggagctgactcatttttgataagtcgtgacc 134  Q
    ||||||||||| |||||| |||||||| ||||||    
T  13412965 ttaggagctgattcatttctgataagtagtgacc 13412932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13419410 - 13419297
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    ||||||||| || |||||||| || ||||| |||||||| |||||||||||||| |||||||||||||| ||| |||||||||| ||||||| ||||  |    
T  13419410 tggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacac 13419311  T
Q  101 ttaggagctgactc 114  Q
    || |||||||||||    
T  13419310 ttgggagctgactc 13419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13446961 - 13446848
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| ||||||| ||||  |    
T  13446961 tggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacac 13446862  T
Q  101 ttaggagctgactc 114  Q
    |||||||| |||||    
T  13446861 ttaggagcagactc 13446848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13426301 - 13426188
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    |||||||||||| |||||||| || || || |||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||||| | ||||       
T  13426301 tggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacat 13426202  T
Q  101 ttaggagctgactc 114  Q
    ||||||||||||||    
T  13426201 ttaggagctgactc 13426188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13453914 - 13453783
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgc 100  Q
    ||||||||| || ||||| || || || || |||||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||||  ||||  |    
T  13453914 tggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaaggaagcattagaacac 13453815  T
Q  101 ttaggagctgactcatttttgataagtcgtga 132  Q
    ||| |||| ||||||||| | ||||| |||||    
T  13453814 ttacgagcggactcatttctaataagccgtga 13453783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 13373145 - 13373035
Alignment:
Q  8 ggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag 107  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| || || || || || || ||||||||| | || ||||| |  |||  ||||||||    
T  13373145 ggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggag 13373046  T
Q  108 ctgactcattt 118  Q
    |||||||||||    
T  13373045 ctgactcattt 13373035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 13378941 - 13378832
Alignment:
Q  8 ggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag 107  Q
    ||||| |||||||| ||||| || ||||| ||||||| ||| || |||||  | ||||| || ||||||||| | || ||||| |  ||| |||||||||    
T  13378941 ggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggag 13378842  T
Q  108 ctgactcatt 117  Q
    ||||||||||    
T  13378841 ctgactcatt 13378832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28430720 - 28430798
Alignment:
Q  1 tggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaa 79  Q
    |||||||||||| |||||||| || ||||| ||||||||||||||||| || || || ||||| || || |||||||||    
T  28430720 tggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaa 28430798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University