View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_4 (Length: 557)
Name: NF1864_low_4
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 45 - 541
Target Start/End: Complemental strand, 2969877 - 2969384
Alignment:
| Q |
45 |
gcaggcaaggcctcttttaagagagagaaattatccagatctaattgatgaaaggatcattgatactcatgattaccatcaattattttggatgataaga |
144 |
Q |
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| T |
2969877 |
gcaggcaaggcctcttttaagagagagaaattatccagatctaattgatgaaaggatcattgatactcatgattaccatcaattattttggatgataaga |
2969778 |
T |
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| Q |
145 |
ctagctgagaaatgtctaagcagagaccctnnnnnnngactaagtatggttgcggtaagtaaacaaatattaatgacttaattgcatagctaagtaaaca |
244 |
Q |
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| T |
2969777 |
ctagctgagaaatgtctaagcagggaccctaaaaaaagactaagtatggttgcggtaagtaaacaaatattaatgacttaattgcatagctaagtaaaca |
2969678 |
T |
|
| Q |
245 |
tatatcatcttttccttacatatgacattcatgatcaacaaagcatgacccgacttttaagtattacatttccgtgatcacaacaggttgttaatgcttt |
344 |
Q |
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| T |
2969677 |
tatatcatcttttccttacatataacattcatgatcaacaaagcatgaccggatttttaagtattacttttccgtgatcacaacaggttgttaatgcttt |
2969578 |
T |
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| Q |
345 |
gacggacatatcggaaggcaacacatgtgacattggaacaggagattactccccagcaagatcagattcatcctatagtgaatcagaatttgatgaaaat |
444 |
Q |
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| T |
2969577 |
gacggacatatcggaaggcaacacatgtgacattggaacaggagattactccccagcaagatcagattcatcctatagtgaatcagaatttgatgaaaat |
2969478 |
T |
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| Q |
445 |
gaagatgagaatggaccctttgagcaaggtgaattactgagcactatatcagaatctacagaaagcaatgaatacataagtcagatgaggcatatga |
541 |
Q |
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| T |
2969477 |
---gatgagaatgaaccctttgagcaaggtgaattactaagaactatttcagaatccacagaaagcaatgaatacataagtcagatgaggcatatga |
2969384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 16331191 - 16331255
Alignment:
| Q |
76 |
tatccagatctaattgatgaaaggatcattgatactcatgattaccatcaattattttggatgat |
140 |
Q |
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| T |
16331191 |
tatccagatctaattgatgaaaggatgatggatacctatgattgtcatcagcttttttggatgat |
16331255 |
T |
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