View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1864_low_7 (Length: 390)

Name: NF1864_low_7
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1864_low_7
NF1864_low_7
[»] chr5 (14 HSPs)
chr5 (17-186)||(13413823-13413992)
chr5 (214-300)||(11005739-11005825)
chr5 (209-272)||(2566250-2566313)
chr5 (209-294)||(37873793-37873879)
chr5 (209-295)||(35310314-35310400)
chr5 (209-282)||(15506770-15506843)
chr5 (209-295)||(32269952-32270037)
chr5 (209-246)||(12033346-12033383)
chr5 (209-249)||(430514-430554)
chr5 (209-252)||(15292180-15292223)
chr5 (213-248)||(42921611-42921646)
chr5 (209-247)||(22188810-22188848)
chr5 (209-295)||(23023461-23023547)
chr5 (209-249)||(25663187-25663227)
[»] chr6 (13 HSPs)
chr6 (209-300)||(3137402-3137493)
chr6 (209-295)||(7749347-7749433)
chr6 (209-297)||(34168785-34168872)
chr6 (209-291)||(17249460-17249542)
chr6 (209-272)||(29338234-29338297)
chr6 (206-246)||(4166074-4166114)
chr6 (215-246)||(4206757-4206788)
chr6 (213-255)||(26225738-26225780)
chr6 (209-295)||(33220866-33220952)
chr6 (209-250)||(959492-959533)
chr6 (209-274)||(34304383-34304448)
chr6 (213-250)||(34554435-34554472)
chr6 (209-269)||(32115610-32115670)
[»] chr8 (18 HSPs)
chr8 (209-295)||(38815160-38815246)
chr8 (209-297)||(24320201-24320289)
chr8 (209-295)||(22589491-22589577)
chr8 (211-295)||(18804479-18804563)
chr8 (209-272)||(4699760-4699823)
chr8 (209-270)||(39434558-39434619)
chr8 (209-249)||(3187882-3187922)
chr8 (209-297)||(4073398-4073486)
chr8 (212-297)||(24350880-24350965)
chr8 (206-270)||(8540532-8540596)
chr8 (209-252)||(500151-500194)
chr8 (209-247)||(8227990-8228028)
chr8 (211-296)||(4066712-4066795)
chr8 (214-295)||(18596759-18596840)
chr8 (209-249)||(6592488-6592528)
chr8 (209-297)||(8619686-8619774)
chr8 (243-299)||(10442812-10442868)
chr8 (209-249)||(42659139-42659179)
[»] scaffold0009 (1 HSPs)
scaffold0009 (209-295)||(102972-103058)
[»] chr2 (16 HSPs)
chr2 (220-297)||(30602353-30602430)
chr2 (216-295)||(3208406-3208485)
chr2 (209-295)||(41868063-41868148)
chr2 (224-295)||(41702138-41702209)
chr2 (209-295)||(4413221-4413307)
chr2 (209-247)||(15515302-15515340)
chr2 (209-250)||(13413262-13413303)
chr2 (209-249)||(18745109-18745149)
chr2 (223-286)||(18892375-18892438)
chr2 (209-295)||(17344504-17344590)
chr2 (209-273)||(9685570-9685634)
chr2 (228-288)||(20143119-20143179)
chr2 (213-249)||(27494223-27494259)
chr2 (209-249)||(27502274-27502314)
chr2 (209-249)||(28224912-28224952)
chr2 (215-247)||(42122731-42122763)
[»] chr1 (24 HSPs)
chr1 (209-297)||(30688421-30688509)
chr1 (209-295)||(5453961-5454047)
chr1 (209-295)||(24177666-24177752)
chr1 (209-249)||(1114023-1114063)
chr1 (215-295)||(31737483-31737563)
chr1 (213-295)||(868560-868642)
chr1 (206-276)||(2764364-2764434)
chr1 (209-255)||(2898608-2898654)
chr1 (209-295)||(22346761-22346847)
chr1 (212-269)||(16323961-16324018)
chr1 (209-248)||(45835341-45835380)
chr1 (221-295)||(7213109-7213183)
chr1 (209-255)||(7483790-7483836)
chr1 (213-271)||(21934267-21934325)
chr1 (206-300)||(33147372-33147466)
chr1 (214-295)||(19035345-19035426)
chr1 (206-249)||(20259949-20259992)
chr1 (216-295)||(48841244-48841323)
chr1 (209-295)||(21472869-21472955)
chr1 (209-295)||(28493486-28493572)
chr1 (209-247)||(34644480-34644518)
chr1 (209-297)||(10348571-10348659)
chr1 (205-249)||(47459594-47459638)
chr1 (209-297)||(50161579-50161667)
[»] chr3 (23 HSPs)
chr3 (209-295)||(26772624-26772710)
chr3 (209-295)||(32546661-32546747)
chr3 (209-297)||(46940928-46941016)
chr3 (209-295)||(4763947-4764033)
chr3 (209-295)||(21552530-21552616)
chr3 (209-275)||(38978954-38979020)
chr3 (209-295)||(39583384-39583470)
chr3 (209-246)||(5338561-5338598)
chr3 (209-295)||(49017833-49017919)
chr3 (209-295)||(53785575-53785661)
chr3 (209-282)||(26276494-26276567)
chr3 (209-270)||(26856917-26856978)
chr3 (211-295)||(44699-44783)
chr3 (224-300)||(50446126-50446202)
chr3 (209-248)||(3443467-3443506)
chr3 (206-253)||(52412043-52412090)
chr3 (209-255)||(13582416-13582462)
chr3 (209-247)||(38671035-38671073)
chr3 (209-273)||(4669818-4669882)
chr3 (209-253)||(7257711-7257755)
chr3 (216-256)||(23535173-23535213)
chr3 (209-265)||(26393841-26393897)
chr3 (209-249)||(37133154-37133194)
[»] scaffold1768 (1 HSPs)
scaffold1768 (212-295)||(342-425)
[»] chr4 (27 HSPs)
chr4 (210-297)||(50442635-50442722)
chr4 (209-295)||(39001263-39001349)
chr4 (206-295)||(50001078-50001167)
chr4 (209-291)||(2852305-2852387)
chr4 (209-295)||(3329862-3329948)
chr4 (209-271)||(53619476-53619538)
chr4 (210-255)||(26521395-26521440)
chr4 (209-292)||(4419133-4419215)
chr4 (223-298)||(32312885-32312960)
chr4 (209-295)||(30940887-30940973)
chr4 (204-282)||(50464446-50464524)
chr4 (209-298)||(42455762-42455851)
chr4 (223-295)||(40392723-40392795)
chr4 (210-254)||(50351146-50351190)
chr4 (213-248)||(50463102-50463137)
chr4 (213-295)||(12053333-12053415)
chr4 (209-271)||(23233269-23233331)
chr4 (209-295)||(31846969-31847055)
chr4 (209-247)||(34107851-34107889)
chr4 (205-255)||(47585159-47585209)
chr4 (209-247)||(55933615-55933653)
chr4 (209-270)||(7536726-7536787)
chr4 (204-241)||(40005308-40005345)
chr4 (206-239)||(56462258-56462291)
chr4 (223-295)||(23604956-23605028)
chr4 (209-253)||(49354225-49354269)
chr4 (209-261)||(53170412-53170464)
[»] scaffold0406 (1 HSPs)
scaffold0406 (206-295)||(6754-6843)
[»] scaffold0148 (1 HSPs)
scaffold0148 (215-295)||(33116-33196)
[»] chr7 (23 HSPs)
chr7 (209-273)||(22197875-22197939)
chr7 (209-273)||(22239882-22239946)
chr7 (209-288)||(45613997-45614076)
chr7 (209-248)||(48539094-48539133)
chr7 (209-295)||(5972371-5972457)
chr7 (209-247)||(28517442-28517480)
chr7 (209-273)||(32584488-32584552)
chr7 (210-249)||(5825185-5825224)
chr7 (209-295)||(40726635-40726721)
chr7 (209-295)||(45003052-45003138)
chr7 (209-249)||(982861-982901)
chr7 (209-253)||(9281291-9281335)
chr7 (209-253)||(9292262-9292306)
chr7 (209-249)||(21326993-21327033)
chr7 (227-295)||(38766190-38766258)
chr7 (209-248)||(27027785-27027824)
chr7 (209-247)||(27521385-27521423)
chr7 (209-247)||(38839240-38839278)
chr7 (232-297)||(12137230-12137295)
chr7 (209-249)||(2904292-2904332)
chr7 (213-249)||(23037457-23037493)
chr7 (209-273)||(41370541-41370605)
chr7 (209-277)||(43333985-43334053)
[»] scaffold0309 (1 HSPs)
scaffold0309 (208-295)||(5190-5277)
[»] scaffold0244 (1 HSPs)
scaffold0244 (209-288)||(16809-16888)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 13413992 - 13413823
Alignment:
Q  17 cacttccttctatccacttgttcctgggtatgttttgaactccttttattgttatcattagtactacccatgtttgtaaatatactatactaatactcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413992 cacttccttctatccacttgttcctgggtatgttttgaactccttttattgttatcattagtactacccatgtttgtaaatatactatactaatactcat 13413893  T
Q  117 tctaaattatgagattcatcaactatttttgcacaaattaacaactaaaaataattgactatttttactg 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13413892 tctaaattatgagattcatcaactatttttgcacaaattaacaagtaaaaataattgactatttttactg 13413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 11005825 - 11005739
Alignment:
Q  214 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 300  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| || ||||||| | | |||||||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttccacttacgtgtaattttc 11005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 2566250 - 2566313
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 272  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||| | ||||||||||||||    
T  2566250 aatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgccc 2566313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 37873793 - 37873879
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttt-tccttccattcatgtgta 294  Q
    ||||||||||||| |||||||| |||||| ||| |||||||| |||| |||||||||||| ||||||| || ||| |||||||||||    
T  37873793 aatgttgtgtttaagaggattgattttgctatcaaaaaaggcctagcggtgcaacttgttacccgtttgtctttctattcatgtgta 37873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 35310400 - 35310314
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||| |   ||| ||||||||||| || ||| | ||||||||||||    
T  35310400 aatgttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgcttgcctcctattcatgtgtaa 35310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 15506770 - 15506843
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttc 282  Q
    |||||||||||||||||||||| |||| ||||| |||||||| || | | |||||||||||| ||||| |||||    
T  15506770 aatgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcgcaacttgttgctcgtttgccttc 15506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 32269952 - 32270037
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||| ||| |||||||||||| || |||| | ||| |||||| |||| || ||||| ||||| ||||||    
T  32269952 aatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagc-gggcagcttgttacccgcttgccttctattcaagtgtaa 32270037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 12033383 - 12033346
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaa 246  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12033383 aatgttgtgtttacgatgattggttttgccatccaaaa 12033346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 430554 - 430514
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  430554 aatgttgtgtttacgaggattgattatgccatccaaaaagg 430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 15292180 - 15292223
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctt 252  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||    
T  15292180 aatgttgtgtttatgaggattgattttgccatccaaaaaagctt 15292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 42921646 - 42921611
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    |||||||||| |||||||||||||||||||||||||    
T  42921646 ttgtgtttacaaggattggttttgccatccaaaaag 42921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 22188810 - 22188848
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  22188810 aatgttgtgtttacgagaattggttttgtcatccaaaaa 22188848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 23023547 - 23023461
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||| ||||| ||||| ||||||||||||| |||  | ||| ||| ||| |||||| ||||  ||| ||||||||    
T  23023547 aatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgcatcttattgtccgtttgccttttatttatgtgtaa 23023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 25663187 - 25663227
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  25663187 aatgttgagtttacgaggattggctttgtcatccaaaaagg 25663227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 3137402 - 3137493
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3137402 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgccttccattcatgtgtaattttc 3137493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 7749433 - 7749347
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||||||| || ||| | ||||||||||||    
T  7749433 aatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaa 7749347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 34168872 - 34168785
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||| | ||||||||| ||||| || ||||| ||||||||||||||    
T  34168872 aatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaatt 34168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 17249460 - 17249542
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgt 291  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||||    
T  17249460 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgt 17249542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 29338234 - 29338297
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 272  Q
    |||||||||||||| ||||||| |||| | |||||||| ||| |||||||||| ||||||||||    
T  29338234 aatgttgtgtttacaaggattgatttttctatccaaaatggcctagcagtgcagcttgttgccc 29338297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 4166074 - 4166114
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaa 246  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  4166074 ataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 4206757 - 4206788
Alignment:
Q  215 gtgtttacgaggattggttttgccatccaaaa 246  Q
    ||||||||||||||||||||||||||||||||    
T  4206757 gtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 26225738 - 26225780
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||    
T  26225738 ttgtgtttatgaggattggttttgtcatccaaaaagacttagc 26225780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 33220866 - 33220952
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||| ||||||||  |||||||||||||||| ||||||  |||| | ||| ||||||| ||| || ||| | ||||||||||||    
T  33220866 aatgttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttgttggccgcttgcctcctattcatgtgtaa 33220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 959533 - 959492
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggc 250  Q
    |||||||||||||||||||||| ||||| |||| ||||||||    
T  959533 aatgttgtgtttacgaggattgattttgtcatctaaaaaggc 959492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 34304448 - 34304383
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgt 274  Q
    |||||||| ||||||||||||| |||||| |||||||||||  |||| |  ||| |||||||||||    
T  34304448 aatgttgtatttacgaggattgattttgcaatccaaaaaggtatagcggcacaaattgttgcccgt 34304383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 34554435 - 34554472
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaaggc 250  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  34554435 ttgtgtttacgaggattgattttgtcatccaaaaaggc 34554472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 32115670 - 32115610
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 269  Q
    |||||||||||||||| ||||| |||||| ||| |||||||  |||| ||| |||||||||    
T  32115670 aatgttgtgtttacgatgattgattttgctatctaaaaaggtctagcggtggaacttgttg 32115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 38815246 - 38815160
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||| || ||||| ||||||||||||    
T  38815246 aatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatgtgtaa 38815160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 24320289 - 24320201
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    |||||||||||||||||||||| |||||  |||||||||||  |||||||||| ||||||||| ||||  |||| |||| |||||||||    
T  24320289 aatgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcctgtttgtcttctattcgtgtgtaatt 24320201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 22589491 - 22589577
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||||  ||||| ||||||    
T  22589491 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttttattcaagtgtaa 22589577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 18804563 - 18804479
Alignment:
Q  211 tgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||| ||||||||||||||||||||||||||||||||||  |||| | ||| ||||||||| | || ||||| ||||| ||||||    
T  18804563 tgttttgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaa 18804479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 4699823 - 4699760
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 272  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||  | ||| ||||||||||    
T  4699823 aatgttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgcagcttgttgccc 4699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 39434619 - 39434558
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 270  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||| | ||| ||||||||    
T  39434619 aatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgc 39434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 3187922 - 3187882
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  3187922 aatgttgtgtttacgagaattggttttgccatccaaaaagg 3187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 4073486 - 4073398
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||||||| |||| ||||  |||||||||| |||||||    ||||||||| |||| || ||||||| ||||||||||||    
T  4073486 aatgttgtgtttacgagaattgattttatcatccaaaaaagcttagcgacacaacttgtttcccgcttgccttccaatcatgtgtaatt 4073398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 24350880 - 24350965
Alignment:
Q  212 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||||||||||||||||| |||||||| || |||  |  || | ||||||||| ||  |||| ||||||||||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaatt 24350965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 8540532 - 8540596
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 270  Q
    ||||||||||||||||||| ||||| ||||  ||||||||||| | ||||||  |||||||||||    
T  8540532 ataaatgttgtgtttacgatgattgattttatcatccaaaaagacgtagcagcacaacttgttgc 8540596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 500194 - 500151
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctt 252  Q
    |||||||||||||||||||||| |||| |||| |||||||||||    
T  500194 aatgttgtgtttacgaggattgattttaccattcaaaaaggctt 500151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 8227990 - 8228028
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  8227990 aatgttgtgtttacgaggaatggttttgctatccaaaaa 8228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 4066795 - 4066712
Alignment:
Q  211 tgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaat 296  Q
    ||||||||| |||| |||||||||| ||||||||||| ||||||    ||||||||||| |||  ||||||||| |||||||||||    
T  4066795 tgttgtgttcacgatgattggttttaccatccaaaaa-gcttagtgacgcaacttgttgtccg-cttccttccaatcatgtgtaat 4066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 18596759 - 18596840
Alignment:
Q  214 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||| |||||||||||||||||||||| ||||||  |||| | ||| ||||||| | | || ||||| ||||| ||||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaa 18596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 6592528 - 6592488
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||||||| |||||||||| |||||| |||||    
T  6592528 aatgttgtgtttacgagtattggttttgtcatccagaaagg 6592488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 8619774 - 8619686
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    |||||||||||||||| ||||| ||||||| | ||||||||| || || |||| ||| ||| ||| ||  |||  ||||||||||||||    
T  8619774 aatgttgtgtttacgacgattgattttgcctttcaaaaaggcctaacaatgcagcttattgtccgcttaacttttattcatgtgtaatt 8619686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 10442868 - 10442812
Alignment:
Q  243 aaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatttt 299  Q
    |||||| |||| | |||||  ||||||||||||| |||||||||||| |||||||||    
T  10442868 aaaaagacttatcggtgcagtttgttgcccgtttaccttccattcatatgtaatttt 10442812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 42659179 - 42659139
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  42659179 aatgttgtgtttacgaggattaattttgtcatccaaaaagg 42659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 103058 - 102972
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||| || ||||| ||||| ||||||    
T  103058 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaa 102972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 30602430 - 30602353
Alignment:
Q  220 tacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||  | ||||| ||||||||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaatt 30602353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 3208406 - 3208485
Alignment:
Q  216 tgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||||| ||||| ||||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaa 3208485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 41868063 - 41868148
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||||||||||||||| ||||||||   |||| | ||||||||||||||| || | ||| ||||| ||||||    
T  41868063 aatgttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaacttgttgcccgcttgctttctattcaagtgtaa 41868148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 41702209 - 41702138
Alignment:
Q  224 aggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||||||||||| |||  | ||| ||||||||||  || ||||| ||||||||||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaa 41702138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 4413221 - 4413307
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| | |||||||| ||||||||||||||||||  |||| | ||| ||||||||||  || ||||| ||||| ||||||    
T  4413221 aatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaagtgtaa 4413307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 15515302 - 15515340
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  15515302 aatgttgtgttcacgaggattggttttgccatccaaaaa 15515340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 13413303 - 13413262
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggc 250  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  13413303 aatgttgtgtttatgagaattggttttgccatccaaaaaggc 13413262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18745109 - 18745149
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  18745109 aatgttgtgtttataaggattggttttgccatccaaaaagg 18745149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 18892375 - 18892438
Alignment:
Q  223 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccatt 286  Q
    |||||| ||||||| |||||| ||||| ||||| ||||| ||||||||||||||  ||||||||    
T  18892375 gaggatcggttttgtcatccagaaaggattagcggtgcagcttgttgcccgtttgtcttccatt 18892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 17344590 - 17344504
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||| |||| | |||||||||||  || | | ||| ||||||||| | || ||||| ||||| ||||||    
T  17344590 aatgttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgccggcttgccttctattcaagtgtaa 17344504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 9685570 - 9685634
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    ||||||||||| || | ||||| ||||||||||||||||||  |||| | ||| |||||||||||    
T  9685570 aatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcccg 9685634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 20143119 - 20143179
Alignment:
Q  228 ttggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattca 288  Q
    ||||||||||||||||||||||  |||| | ||||||||||| | |||| ||||| |||||    
T  20143119 ttggttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattca 20143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 27494259 - 27494223
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||  |||||||||||||||||||||||    
T  27494259 ttgtgtttacgaatattggttttgccatccaaaaagg 27494223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 27502314 - 27502274
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||| ||||| |||||| |||||||||||    
T  27502314 aatgttgtgtttacgaagattgattttgcaatccaaaaagg 27502274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 28224952 - 28224912
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||| || |||| |||||||||||||||||||    
T  28224952 aatgttgtgtttatgaagatttgttttgccatccaaaaagg 28224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 42122763 - 42122731
Alignment:
Q  215 gtgtttacgaggattggttttgccatccaaaaa 247  Q
    ||||||||||||| |||||||||||||||||||    
T  42122763 gtgtttacgaggactggttttgccatccaaaaa 42122731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 30688509 - 30688421
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||| | ||| ||||||||||| || || || ||||||||||||||    
T  30688509 aatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaatt 30688421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 5454047 - 5453961
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||| ||||||||||||| ||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||||||||    
T  5454047 aatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 5453961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 24177666 - 24177752
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| ||||||||||||||||||| |||||||||  |||| ||||| ||||||||||| ||  |||| ||||| ||||||    
T  24177666 aatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagcttgttgcccgcttgtcttctattcaagtgtaa 24177752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 1114023 - 1114063
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaagg 1114063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 31737483 - 31737563
Alignment:
Q  215 gtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||| ||||||||||||||||||||| || | ||| ||||||| | |||| ||||| ||||| ||||||    
T  31737483 gtgtttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttctattcaagtgtaa 31737563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 868560 - 868642
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||| || ||||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||||| ||||| ||||||    
T  868560 ttgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaa 868642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 2764434 - 2764364
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttt 276  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||| ||||| | ||| |||||| |||||||    
T  2764434 ataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagcggcgcagcttgttacccgttt 2764364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 2898654 - 2898608
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  2898654 aatgttgtgtttaagaggattgattttgccatccaaaaaggcttagc 2898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 22346847 - 22346761
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| ||||||||| |||||||||||||||||||  |||| | ||| ||||||| ||| || ||||| ||||| ||||||    
T  22346847 aatgttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaa 22346761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 16323961 - 16324018
Alignment:
Q  212 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 269  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||||| |||||||    
T  16323961 gttgtgtttacgaggattggtttaaccatccaaaaaggcctagtagtgcagcttgttg 16324018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 45835341 - 45835380
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  45835341 aatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 7213183 - 7213109
Alignment:
Q  221 acgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||| |||||||||| |||||||||||||  |||| | ||||||||||||||| || ||||| ||||| ||||||    
T  7213183 acgatgattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaa 7213109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 7483836 - 7483790
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||    
T  7483836 aatgttgtgtttacgaagattagttttgccatctaaaaaggcttagc 7483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 21934325 - 21934267
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 271  Q
    |||| |||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  21934325 ttgtatttaagaggattggttttgccatccaaaaagggttagcggcgcagcttgttgcc 21934267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 33147466 - 33147372
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 300  Q
    |||||| ||||||||| || ||||||||||   ||||||||||| ||||| ||||||| | ||| | | || |||||||||| ||||||||||||    
T  33147466 ataaatattgtgtttaagatgattggttttataatccaaaaagggttagcggtgcaacatattgtctgcttaccttccattcctgtgtaattttc 33147372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 19035426 - 19035345
Alignment:
Q  214 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||| |||||||||||||||| ||||||||||||  |||| | ||| ||||||| ||| || ||||| ||||| ||||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaa 19035345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 20259949 - 20259992
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  20259949 ataaatgttgtgtttatatggattggttttgccatccaaaaagg 20259992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 48841244 - 48841323
Alignment:
Q  216 tgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||| |||||| ||||||||| |  |||||| ||||||||||| ||| || |||   ||||||||||||    
T  48841244 tgtttacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtccgcttacctcatattcatgtgtaa 48841323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 21472955 - 21472869
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||| ||| | ||||| |||||||||||||||||||||  |||| | ||||||| ||||||| || | ||| ||||| ||||||    
T  21472955 aatgttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaacttattgcccgcttgcattctattcaagtgtaa 21472869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 28493486 - 28493572
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||| |||| |||||||||| ||||||||||||||||||  |||| | |||  |||||| ||||||  |||| ||||| ||||||    
T  28493486 aatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaa 28493572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 34644518 - 34644480
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  34644518 aatgttgtgtttacgatgattgattttgccatccaaaaa 34644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 10348571 - 10348659
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||| | | ||||||| || ||| ||||||| | |||||| | || |||||||||  ||  |||||||||||||||||||    
T  10348571 aatgttgtgtttaagggtattggttgtgtcattcaaaaagacatagcagcgtaatttgttgcccacttgtcttccattcatgtgtaatt 10348659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 47459638 - 47459594
Alignment:
Q  205 tataaatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  47459638 tataaatgttgtgtttacgagaattgatttagccattcaaaaagg 47459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 50161579 - 50161667
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||| ||||||||  ||||| ||| |||| |||||||| |  || |||||||||| ||| ||||| ||| || |||||||    
T  50161579 aatgttgtgtttaagaggattgaatttgctatctaaaacggcttagcggcacagcttgttgcccttttgccttctatttatttgtaatt 50161667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 26772710 - 26772624
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||||||||    
T  26772710 aatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 26772624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 32546747 - 32546661
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||||| ||||| ||||||    
T  32546747 aatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaa 32546661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 46940928 - 46941016
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    ||||||||||||||||  |||| |||||  |||||||||| | |||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  46940928 aatgttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgcctgtttaccttctattcatgtgtaatt 46941016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 4763947 - 4764033
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||||| |  ||||||||||||||||||| |  | ||||||||||||||| || ||||| ||||| ||||||    
T  4763947 aatgttgtgtttacgaggattagaattgccatccaaaaaggcttggtggcgcaacttgttgcccgcttgccttctattcaagtgtaa 4764033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 21552616 - 21552530
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||| || |||||||||| ||||||||||| |||  | | |||||||||||||||||| ||||| ||||| ||||||    
T  21552616 aatgttgtgtttacaagaattggttttgacatccaaaaagacttgacggcgcaacttgttgcccgtttaccttctattcaagtgtaa 21552530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 38978954 - 38979020
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 275  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  38978954 aatgttgtgtttacgaaaattagttttgccatccaaaaaggcttaacaacgcaacttgttgcccgtt 38979020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 39583384 - 39583470
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||| |||||||||||||||| ||||||||||||||||||  |||| | ||||||||||| | | || | ||| ||||||||||||    
T  39583384 aatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaa 39583470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 5338598 - 5338561
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaa 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5338598 aatgttgtgtttacgaggattggttttgccatccaaaa 5338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 49017919 - 49017833
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||| |||||||| |||||||||||||||||  |  || ||||| ||||||| ||| || ||||| ||||| ||||||    
T  49017919 aatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagcttgttgtccgcttgccttctattcaagtgtaa 49017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 53785661 - 53785575
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||| ||||||||||||||||||||||||||||| ||||   ||| | | | ||||||||||| || ||||| ||||| ||||||    
T  53785661 aatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcccgcttgccttctattcaagtgtaa 53785575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 26276567 - 26276494
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttc 282  Q
    ||||||||||||| |||||||| |||||||||||||||||   |||| ||| | ||||||||||| || |||||    
T  26276567 aatgttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgccttc 26276494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 26856917 - 26856978
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 270  Q
    ||||||||| || |||||||||||||| |||||||||||||| |||| | ||| ||||||||    
T  26856917 aatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 26856978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 44783 - 44699
Alignment:
Q  211 tgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||| || |||||| |||||||||||||||||||  |||| | |||  |||||||||| || ||||| ||||| ||||||    
T  44783 tgttgtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaa 44699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 50446202 - 50446126
Alignment:
Q  224 aggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 300  Q
    ||||||||||||| |||||||||||| ||||||| |||  |||||||||| ||  ||| ||||| | ||||||||||    
T  50446202 aggattggttttgtcatccaaaaaggattagcagcgcaggttgttgcccgcttatctttcattcctatgtaattttc 50446126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 3443467 - 3443506
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  3443467 aatgttgtgtttacgatgattggttttgccatccacaaag 3443506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 52412043 - 52412090
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 253  Q
    |||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  52412043 ataaatattgtgtttacaatgattgattttgccatccaaaaaggctta 52412090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 13582462 - 13582416
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    |||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  13582462 aatgttgtgtttacgaagattgatttagccatccaaaaaggcctagc 13582416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 38671035 - 38671073
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  38671035 aatgttgtgtgtacgaggattggttttgccatctaaaaa 38671073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 4669818 - 4669882
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    |||||||||||||||| ||||| |||||  ||||||||||| || || | ||| |||||||||||    
T  4669818 aatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccg 4669882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 7257711 - 7257755
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctta 253  Q
    |||||||||||||||| |||| |||||| ||| ||||||||||||    
T  7257711 aatgttgtgtttacgaagattagttttgtcattcaaaaaggctta 7257755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 23535213 - 23535173
Alignment:
Q  216 tgtttacgaggattggttttgccatccaaaaaggcttagca 256  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  23535213 tgtttacgaggattgattttgccatccagaaagggttagca 23535173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 26393841 - 26393897
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaactt 265  Q
    |||||||||||||||||||||| | || |||||||| |||| ||||| || ||||||    
T  26393841 aatgttgtgtttacgaggattgatatttccatccaacaaggtttagcggtacaactt 26393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 37133154 - 37133194
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||  |||||||||||||| |||||||||||    
T  37133154 aatgttgtgtttataaggattggttttgcgatccaaaaagg 37133194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 342 - 425
Alignment:
Q  212 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||| |||||||||||||||||||||| |  | ||| ||||||||| | |||||||| ||||| ||||||    
T  342 gttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatcttgttgccggctttccttctattcaagtgtaa 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 50442635 - 50442722
Alignment:
Q  210 atgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||  | ||| ||||||||||| ||  ||||||||| | |||||||    
T  50442635 atgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtcttccattcctttgtaatt 50442722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 39001349 - 39001263
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||| | |||  |||||||||| || ||| | ||||||||||||    
T  39001349 aatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgcttgcctcctattcatgtgtaa 39001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 50001078 - 50001167
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||| ||||| |||||||||||||||||   |||| | ||| ||||||||||| || ||| | ||||||||||||    
T  50001078 ataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 50001167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 2852387 - 2852305
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgt 291  Q
    ||||||||||| || ||||||||||||  ||| |||||||||||||| | ||| ||||||||| | || ||||||||||||||    
T  2852387 aatgttgtgttcacaaggattggttttttcattcaaaaaggcttagcggcgcagcttgttgcctgattaccttccattcatgt 2852305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 3329948 - 3329862
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||| ||||||||||| ||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||| | ||||| ||||||    
T  3329948 aatgctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaa 3329862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 53619538 - 53619476
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 271  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||| | ||| |||||||||    
T  53619538 aatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgcc 53619476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 26521440 - 26521395
Alignment:
Q  210 atgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  26521440 atgttgtgtttacgaggattggttttgtcatccaaaaaggtttagc 26521395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 4419215 - 4419133
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtg 292  Q
    |||||||||||||||| ||||||||||||||||||||||  | |||| | ||| ||||||||||| || ||| | |||||||||    
T  4419215 aatgttgtgtttacgatgattggttttgccatccaaaaaatc-tagcggcgcagcttgttgcccgcttgcctcctattcatgtg 4419133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 32312885 - 32312960
Alignment:
Q  223 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattt 298  Q
    ||||||||||||||||||  ||||||  ||||| | | | |||||||||||||| |||||||| ||||||||||||    
T  32312885 gaggattggttttgccatttaaaaagaattagcggcgtatcttgttgcccgtttgccttccatccatgtgtaattt 32312960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 30940887 - 30940973
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||| | |||||||| ||||||||||||||||||  ||||   ||| ||||||||||| || ||||| ||||| ||||||    
T  30940887 aatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaa 30940973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 50464446 - 50464524
Alignment:
Q  204 atataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttc 282  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| | |||| | ||| ||||||| ||| || |||||    
T  50464446 atatgaatgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttc 50464524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 42455762 - 42455851
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattt 298  Q
    |||||||| |||||||| ||||  |||| ||| |||||||| |||||||  ||||||||||| || || ||||| |||||| ||||||||    
T  42455762 aatgttgtttttacgagaattgactttgtcattcaaaaaggtttagcagcacaacttgttgctcgcttgccttctattcatatgtaattt 42455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 40392723 - 40392795
Alignment:
Q  223 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||||||  |||| | ||| ||||||| ||| || ||||| ||||| ||||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaa 40392795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 50351146 - 50351190
Alignment:
Q  210 atgttgtgtttacgaggattggttttgccatccaaaaaggcttag 254  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||    
T  50351146 atgttgtgtttaagtggattggttttgccatccaaaaaggattag 50351190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 50463102 - 50463137
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    ||||||||||||||||| ||||||||||||||||||    
T  50463102 ttgtgtttacgaggatttgttttgccatccaaaaag 50463137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 12053415 - 12053333
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||   ||| ||||||| | | || ||||| ||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaa 12053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 23233269 - 23233331
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 271  Q
    |||||||| |||| |||||||| ||| || |||||||||||||||||||  || |||||||||    
T  23233269 aatgttgtctttatgaggattgatttggctatccaaaaaggcttagcagcacagcttgttgcc 23233331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 31847055 - 31846969
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||  |||||||| ||| |||||||||||||||  |||| | |||  |||||||||| || ||| | ||||||||||||    
T  31847055 aatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtgtaa 31846969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 34107851 - 34107889
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  34107851 aatgttgtgttcacgaggattggttttgtcatccaaaaa 34107889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 47585159 - 47585209
Alignment:
Q  205 tataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 255  Q
    ||||||| |||||||||||| ||||||||||| |||| ||||||| |||||    
T  47585159 tataaattttgtgtttacgaagattggttttgtcatctaaaaaggtttagc 47585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 55933615 - 55933653
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  55933615 aatgttgtgtttacgatgattgattttgccatccaaaaa 55933653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 7536726 - 7536787
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 270  Q
    |||||| ||||||| | |||||||||||  ||||||||||   |||||||||||||||||||    
T  7536726 aatgttatgtttacaatgattggttttgtgatccaaaaagatctagcagtgcaacttgttgc 7536787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 40005308 - 40005345
Alignment:
Q  204 atataaatgttgtgtttacgaggattggttttgccatc 241  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40005308 atatcaatgttgtgtttacaaggattggttttgccatc 40005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 56462258 - 56462291
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgcca 239  Q
    |||||||||||||||||||| |||||||||||||    
T  56462258 ataaatgttgtgtttacgagaattggttttgcca 56462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 23605028 - 23604956
Alignment:
Q  223 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||| ||||| ||||||||||||  |||| | ||||||||||| ||| ||  |||| ||||||||||||    
T  23605028 gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaa 23604956  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 49354225 - 49354269
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctta 253  Q
    |||||||||||||||| ||||| ||||| | ||||||||||||||    
T  49354225 aatgttgtgtttacgatgattgattttgtcgtccaaaaaggctta 49354269  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 53170464 - 53170412
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgca 261  Q
    ||||||||||| |||||||||| |||||| ||| |||||||  ||||||||||    
T  53170464 aatgttgtgttcacgaggattgattttgctatctaaaaaggtctagcagtgca 53170412  T

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Target: scaffold0406 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 6843 - 6754
Alignment:
Q  206 ataaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||| |||||||||||||| |||||||||||||||||||||||  ||||   ||| ||||||||||| || ||||| ||||| ||||||    
T  6843 ataaaagttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

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Target: scaffold0148 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 33196 - 33116
Alignment:
Q  215 gtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||| ||||| ||||||||||||||| || ||||| ||||||||| | || ||||| ||||| ||||||    
T  33196 gtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcctgcttgccttctattcaagtgtaa 33116  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 22197939 - 22197875
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||| || |||||||||||||||||    
T  22197939 aatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccg 22197875  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 22239882 - 22239946
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||| || |||||||||||||||||    
T  22239882 aatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccg 22239946  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 45613997 - 45614076
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattca 288  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| | ||| ||||||| ||| || ||||| |||||    
T  45613997 aatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 45614076  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 48539133 - 48539094
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48539133 aatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 5972371 - 5972457
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||||||||||| |||||||||||||||||| | || |  |||||||| || ||||| | ||||| ||||| ||||||    
T  5972371 aatgttgtgtttacgaggattagttttgccatccaaaaagacctaacgatgcaacttatttcccgtatgccttctattcaagtgtaa 5972457  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 28517442 - 28517480
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28517442 aatgttgtgtttacgaggattggttttgccatccaaaaa 28517480  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 32584552 - 32584488
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    |||||||||||||| | ||||| |||| |||||||||||||| |||||| ||||||||| |||||    
T  32584552 aatgttgtgtttacaaagattgattttaccatccaaaaaggcctagcagcgcaacttgtcgcccg 32584488  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 5825224 - 5825185
Alignment:
Q  210 atgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5825224 atgttgtgtttacgaggattggttttgccatcgaaaaagg 5825185  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 40726635 - 40726721
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    ||||||||||||| |||||||| |||||||||||||||| |  || ||  ||| ||||||||||| || ||| | ||||||||||||    
T  40726635 aatgttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgcccgcttgcctcctattcatgtgtaa 40726721  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 45003052 - 45003138
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||| ||||| ||||||||||||||||||  |||| | ||| ||| ||| ||| || ||| | ||||||||||||    
T  45003052 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaa 45003138  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 982901 - 982861
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  982901 aatgttgtgttcacgaggattggtattgccatccaaaaagg 982861  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 9281291 - 9281335
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctta 253  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  9281291 aatgttgtgtttaggagaattggttttgcaatccaaaaaggctta 9281335  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 9292262 - 9292306
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggctta 253  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  9292262 aatgttgtgtttaggagaattggttttgcaatccaaaaaggctta 9292306  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 21326993 - 21327033
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  21326993 aatgttgtgttcacgaggattgattttgccatccaaaaagg 21327033  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 38766258 - 38766190
Alignment:
Q  227 attggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||||||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaa 38766190  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 27027785 - 27027824
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaag 248  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  27027785 aatgttgtgttcacgaggattggttttgctatccaaaaag 27027824  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 27521423 - 27521385
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  27521423 aatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 38839278 - 38839240
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaa 247  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  38839278 aatgttgtgtttacgaagattggttttaccatccaaaaa 38839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 12137230 - 12137295
Alignment:
Q  232 ttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 297  Q
    |||||||||| | ||||| ||||| | ||||||||||||||| || |||| | |||||||||||||    
T  12137230 ttttgccatcaagaaagggttagcggcgcaacttgttgcccgcttgcctttcgttcatgtgtaatt 12137295  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 2904332 - 2904292
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  2904332 aatgttgtgtttacgataattggttttgctatccaaaaagg 2904292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 23037493 - 23037457
Alignment:
Q  213 ttgtgtttacgaggattggttttgccatccaaaaagg 249  Q
    |||||||||||||||||| |||||||||| |||||||    
T  23037493 ttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 41370541 - 41370605
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 273  Q
    |||||||| ||||| | ||||||||||| |||| |||||||| |||| | ||||| |||||||||    
T  41370541 aatgttgtttttacaatgattggttttggcatctaaaaaggcctagcggcgcaacctgttgcccg 41370605  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 43333985 - 43334053
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttt 277  Q
    ||||||| ||||| || ||||||||||||||| ||||||| ||| || | ||| |||||||||| ||||    
T  43333985 aatgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgcagcttgttgcccctttt 43334053  T

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Target: scaffold0309 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 5277 - 5190
Alignment:
Q  208 aaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 295  Q
    |||||||||||| ||||||||||  |||||||||||||||||  |||| | ||| ||||||||||| || | ||| ||||| ||||||    
T  5277 aaatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaa 5190  T

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Target: scaffold0244 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 16809 - 16888
Alignment:
Q  209 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattca 288  Q
    |||||||| || ||||| |||| ||||||||||||||||||  |||| ||||| | |||||||| ||| |||||||||||    
T  16809 aatgttgtattcacgagaattgattttgccatccaaaaaggtctagcggtgcagcatgttgcccttttgccttccattca 16888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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