View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1864_low_9 (Length: 349)
Name: NF1864_low_9
Description: NF1864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1864_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 139 - 333
Target Start/End: Original strand, 32168956 - 32169147
Alignment:
| Q |
139 |
agattgtggatgtaatatttgtataagcacaatcgagacattattcatcaattgacaacacnnnnnnnnnncttctctctatataaagcttactagttct |
238 |
Q |
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| T |
32168956 |
agattgtggatgtaatatttgtataagcacaatcgagacattattcatcaattgacaacacttttttttc---tctctctatataaaccttactagttct |
32169052 |
T |
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| Q |
239 |
tttctcttaccataatagctttattgagaacggagtccccattaaaatcatctaaagttgtcctgaaagagacactcaaactaaaatatcctaaa |
333 |
Q |
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| T |
32169053 |
tttctcttaccataatagctttatttagaacggagtccccattaaaatcatctaaagttgtcctgaaagagacactcaaactaaaatatcctaaa |
32169147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32168816 - 32168892
Alignment:
| Q |
1 |
attatgaaaattgttgattgtttttctttaatagagaataacataatctgaataaaagggatggtatcaacattttg |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168816 |
attatgaaaattgttgattgtttttctttaatagagaataacataatctgaataaaagggatggtatcaacattttg |
32168892 |
T |
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