View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18650_high_1_N (Length: 646)
Name: NF18650_high_1_N
Description: NF18650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18650_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 30 - 625
Target Start/End: Original strand, 11437403 - 11437998
Alignment:
| Q |
30 |
agaatcacaagacacgcgccgccaatcatccgcggaatatgcaacactaattcttggagatgaatcaccataatttcctctaatattcttcactgattga |
129 |
Q |
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| T |
11437403 |
agaatcacaagacacgcgccgccaatcatccgcggaatatgcaacactaattcttggagatgaatcaccataatttcctctaatattcttcactgattga |
11437502 |
T |
|
| Q |
130 |
gttcttttcacaacattttcatgttttgatcctgatttttgacccctcaatcttctacataaaggccttaaaaatttcaaatacttttgaaacatgctcc |
229 |
Q |
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| T |
11437503 |
gttcttttcacaacattttcatgttttgatcctgacttttgacccctcaatcttctacacaaaggccttaaaaatttcaaatacttttgaaacatgctcc |
11437602 |
T |
|
| Q |
230 |
ttgataatgttctacaccttttcaatgaagggcttctcgaattttctagaggaacgactttatttgttacatgtgatatggaagaagctaaggttgaatt |
329 |
Q |
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| T |
11437603 |
ttgataatgttctacaccttttcaatgaaggggttcttgaattttctagaggaaccactttatttgttacatgtgatatggaagaagctaaggttgaatt |
11437702 |
T |
|
| Q |
330 |
tgaatctgaatttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagt |
429 |
Q |
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| T |
11437703 |
tgaatctgaatttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagt |
11437802 |
T |
|
| Q |
430 |
tgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggca |
529 |
Q |
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| T |
11437803 |
tgatctgcatcaacaagagtggtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggca |
11437902 |
T |
|
| Q |
530 |
ttcttggatccatttcaatgaaggaagaagcttcatcagaagcatcaagataagttctaaaggaagaaccatcaaggctttctactagtgatgatg |
625 |
Q |
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| T |
11437903 |
ttcttggatccatttcaatgaaggaagaagcttcatcagaagcatcaagataagttctaaaggaagaaccatcaaggctttctactagtgatgatg |
11437998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 79 - 567
Target Start/End: Original strand, 11430111 - 11430593
Alignment:
| Q |
79 |
attcttggagatgaatcaccataatttcctctaatattcttcactgattgagttcttttcacaacattttcatgttttgatcctgatttttgacccctca |
178 |
Q |
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| T |
11430111 |
attcttggagatgattcacaataatttcttcttatattcttaactgattgagttcttttcacaacattttcatgctttgttcctgaattttgacccctca |
11430210 |
T |
|
| Q |
179 |
atcttctacataaaggccttaaaaatttcaaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaagggcttctcgaattttctag |
278 |
Q |
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| T |
11430211 |
atcttctacacaaagggcttaaaaaattcaaatacttttgaaacattttcctcgataatgttctacaccttttcaatgaaggagttctagggttttctat |
11430310 |
T |
|
| Q |
279 |
aggaacgactttatttgttacatgtgatatggaagaagctaaggttgaatttgaatctgaatttgaattagaatttgatgaatcatattcatatggttct |
378 |
Q |
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| T |
11430311 |
aggaaccaatttttttggaacatgtgaggatgaacaaggtaaagttgaatttgaa------tttgaatttgaattaaatgaatcatattcatatggttca |
11430404 |
T |
|
| Q |
379 |
atattcaatgattcaacaaataatggcattaagtaaccattggaaaagagttgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaa |
478 |
Q |
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| T |
11430405 |
atattcaatgattcaacaaaaaggggtattaagtaaccatttgaaaagagttgatctgcatcaacaagagttgtgaggggggaatgttgtgaagttggaa |
11430504 |
T |
|
| Q |
479 |
aatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggcattcttggatccatttcaatgaaggaagaagcttcatca |
567 |
Q |
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| T |
11430505 |
aatcaaattttaaatcttgtgagtttatgaaaaatcttctagaaggtggcattcttggatccatttcaatgaaggaagaaccttcatca |
11430593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 73 - 620
Target Start/End: Original strand, 11422945 - 11423468
Alignment:
| Q |
73 |
acactaattcttggagatgaatcaccataatttcctctaatattcttcactgattgagttcttttcacaacattttcatgttttgatcctgatttttgac |
172 |
Q |
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| T |
11422945 |
acactaattcttggagatgattcacggtaatttcctttcttattcttcactgattgagttcttttcccaacattttcatgtcttggtcctgatttgtgac |
11423044 |
T |
|
| Q |
173 |
ccctcaatcttctacataaaggccttaaaaatttcaaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaagggcttctcgaatt |
272 |
Q |
| |
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| T |
11423045 |
ccctcaatttacttcccaaatgcctaaagaaattaaaatacttttgaaacattctccttgataatgttctacacattttcattattgttattcctgaatt |
11423144 |
T |
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| Q |
273 |
ttctagaggaacgactttatttgttacatgtgat-atg--gaagaagctaaggttgaatttgaatctgaatttgaattagaatttgatgaatcatattca |
369 |
Q |
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| T |
11423145 |
ttctaaaggaactactttttgtggtatatgtgatgatgatgaagaagctgatgttgaatttgaatc------------------tgatgaatcatattca |
11423226 |
T |
|
| Q |
370 |
tatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagttgatctgcatcaacaagagtagtgagaggggattcttgta |
469 |
Q |
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| T |
11423227 |
tatggttcagttttcaatgattaaacaaaatatggcataaagtaaccattggaaaagagttggtctgcatcaacaag---attgagagaaga---atgtg |
11423320 |
T |
|
| Q |
470 |
aggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggcattcttggatccatttcaatgaaggaagaagcttcatcaga |
569 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||| | |||| ||||||| |||||| |||||||||||| ||||||||||||||| | |
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| T |
11423321 |
aggttggaaaatgaaatttaaaatcttgtgagtttataaagaatcttttagaaggtggcatttttggattcatttcaatgaaagaagaagcttcatcata |
11423420 |
T |
|
| Q |
570 |
agcatcaagataagttctaaaggaagaaccatcaaggctttctactagtga |
620 |
Q |
| |
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| T |
11423421 |
agcatcaagagaagttctaaag---gagtcatcaaggctttctacaagtga |
11423468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 382 - 556
Target Start/End: Complemental strand, 44907410 - 44907239
Alignment:
| Q |
382 |
ttcaatgattcaacaaataatggcattaagtaaccattggaaaagagttgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaaaat |
481 |
Q |
| |
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||||| |||||||||| || ||||| | |||||||| |||||||||| |||||||| |||||||||| |||||||||| || |||||||||||| |
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| T |
44907410 |
ttcaaagattcaacaacaaaaggcataaggtaaccatcagaaaagagttcatctgcatgaacaagagta---agaggggatt---gtgaggttggaaaat |
44907317 |
T |
|
| Q |
482 |
caaatttga---aatcttgtgagtttataaagaatcttcttgaagatggcattcttggatccatttcaatgaaggaag |
556 |
Q |
| |
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|||||||| |||| ||||| || || ||||||||| | |||| |||||||||||||||||| ||||||||||||| |
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| T |
44907316 |
caaatttgttggaatcatgtgaattcatgaagaatcttttagaaggtggcattcttggatccatctcaatgaaggaag |
44907239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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