View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18650_high_3 (Length: 490)
Name: NF18650_high_3
Description: NF18650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18650_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 5377385 - 5377711
Alignment:
| Q |
24 |
tcatcaacgggcctgccatgaaatatcatgtttatgctactctaattcaaggcattaaggatccatggactatcatgtttaacaacgggcctgccatgaa |
123 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
5377385 |
tcatcaacgggcctgccatgcaatatcatgtttatgctactctaattcaagacattaaggatccatggactatcatgttta-cagcgggcctgccatgaa |
5377483 |
T |
|
| Q |
124 |
atatcatgtttaaggatctagttcggctaggaaacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5377484 |
atatcatgtttaaggatctagttcggctaggaaacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagc |
5377583 |
T |
|
| Q |
224 |
ttccatggactcggctttgtctaaccatgccacccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccctcacggctag |
323 |
Q |
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| T |
5377584 |
tcccatggactcggctttgtctaaccatgccacccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccctcacagctag |
5377683 |
T |
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| Q |
324 |
tttttgtttttgctctcttgtgtttgtt |
351 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
5377684 |
tttttgtttttgccctcttgtgtttgtt |
5377711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 5374371 - 5374258
Alignment:
| Q |
349 |
gttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcgaaccagttaaggt |
448 |
Q |
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| T |
5374371 |
gttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcgaaccagttaaggt |
5374272 |
T |
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| Q |
449 |
gatcagtgaatgtt |
462 |
Q |
| |
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|||||||||||||| |
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| T |
5374271 |
gatcagtgaatgtt |
5374258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 156 - 324
Target Start/End: Complemental strand, 37486667 - 37486499
Alignment:
| Q |
156 |
aacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagcttccatggactcggctttgtctaaccatgcca |
255 |
Q |
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|||||| ||||||||||||||||||| ||||||||| ||||||| | || |||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
37486667 |
aacactcctatcttgcatactcttcgcgagggtaataaatgcgccgatttccttgctaagttgagagcttccataaactcggctttgtctaaccatgcca |
37486568 |
T |
|
| Q |
256 |
cccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccctcacggctagt |
324 |
Q |
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||||||| || | || | |||||||| ||||||||| |||| |||||||| ||||||| ||||||| |
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| T |
37486567 |
cccctcctgaggatcttttgcctctccttagggatgattcttggggaacttttttccctcgtggctagt |
37486499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 37486744 - 37486682
Alignment:
| Q |
24 |
tcatcaacgggcctgccatgaaatatcatgtttatgctactctaattcaaggcattaaggatc |
86 |
Q |
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|||||||||| || | |||| | |||||||||||||| ||||||||||||| |||||| |||| |
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| T |
37486744 |
tcatcaacggcccagtcatggagtatcatgtttatgccactctaattcaagacattaaagatc |
37486682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 133 - 324
Target Start/End: Complemental strand, 35379199 - 35379004
Alignment:
| Q |
133 |
ttaaggatctagttcggctaggaaacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagcttc----ca |
228 |
Q |
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|||| |||||||||| ||| | |||||| ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||| |||||| || |
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| T |
35379199 |
ttaaagatctagttcagcttcggaacactcctatcttgcatactcttcgcgagggtaatcgttgcgccgacttccttgctaagttgggagcttccatgca |
35379100 |
T |
|
| Q |
229 |
tggactcggctttgtctaaccatgccacccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccctcacggctagt |
324 |
Q |
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||||||||||||||||||||||| |||||||||| |||| || | |||||||| ||||||||| |||| |||||||| | ||||| ||||||| |
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| T |
35379099 |
tggactcggctttgtctaaccataccacccctcctgacgatcttttgcctctccttagggatgattcttggggaactttttcccctcgtggctagt |
35379004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 313
Target Start/End: Complemental strand, 53003093 - 53002935
Alignment:
| Q |
155 |
aaacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagcttccatggactcggctttgtctaaccatgcc |
254 |
Q |
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||||||| |||| ||||| |||||||||||||| || | ||||| || ||||||| ||| |||| ||||||| ||||||| || ||||||| |||||| |
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| T |
53003093 |
aaacactcctatattgcacactcttcgtgaggggaaccgctgcgccaattttcttgttaaattgggagcttccgtggactcagccttgtctattcatgcc |
53002994 |
T |
|
| Q |
255 |
acccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccc |
313 |
Q |
| |
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|| | || || ||| || | |||||| ||| | |||||||||| ||||||| |||||| |
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| T |
53002993 |
gccacccctgatggattgcttcctctcttaaagaatgatgcttggggaacttacttccc |
53002935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 313
Target Start/End: Original strand, 26792569 - 26792726
Alignment:
| Q |
155 |
aaacacttctatcttgcatactcttcgtgagggtaatcaatgcgctaactttcttgctaagttggaagcttccatggactcggctttgtctaaccatgcc |
254 |
Q |
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||||||| |||||||||| |||||||||||||| | | ||||| | |||||||||||||||| ||||||| |||||| || ||||||| ||||| |
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| T |
26792569 |
aaacactcctatcttgcacactcttcgtgagggaactgt-tgcgccgattttcttgctaagttgggagcttccgtggactaagccttgtctattcatgca |
26792667 |
T |
|
| Q |
255 |
acccctcccgacggactggtacctctcctaagggatgatgcttgaggaactttcttccc |
313 |
Q |
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|||||||| || ||| || ||||||| |||||||||||||||| ||||||| |||||| |
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| T |
26792668 |
acccctcctgatggattgctacctcttttaagggatgatgcttggggaacttacttccc |
26792726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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