View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18650_high_4 (Length: 443)
Name: NF18650_high_4
Description: NF18650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18650_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 82 - 429
Target Start/End: Complemental strand, 27926569 - 27926222
Alignment:
| Q |
82 |
ttttgggcaatggaaatttgtgtgaaaattcatcttaccaaaactgggagactcctgcaactgataatttgcaaacacattatcgaatacatcatccatc |
181 |
Q |
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| T |
27926569 |
ttttgggcaatggaaatttgtgtgaaaattcatcttaccaaaactgggagactcctgcaactgataatttgcaaacactttatcgaatacatcatccatc |
27926470 |
T |
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| Q |
182 |
gaatcgagcttttccatccatgattgaaaacattgatcttaattacacagaatttcaacatcagtaaattaaatcaacaataggatcatcaggctcttag |
281 |
Q |
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| T |
27926469 |
gaatcgagcttttccatccatgattgaaaacattgatcttaattacacagaatttcaacatcagtaaattaaatcaacaataggatcatcaggctcttag |
27926370 |
T |
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| Q |
282 |
atcttaactgtgtaaatttttgagcaatggaaaaaatgaatagaaaatagttttaccggaactgagaaactcgtgggattgagaatttgaagaggcaata |
381 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27926369 |
atcttaactgtgtaaatttttgagcaatggaaagaatgaatagaaaatagttttaccggaactgagaaactcgtgggattgagaatttgaagaggcaata |
27926270 |
T |
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| Q |
382 |
tcaatggaatagagagattccaaaaccctagaaggaggagactggttc |
429 |
Q |
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||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
27926269 |
tcattggaatggagagattccaaaaccctagaaggaggaaactggttc |
27926222 |
T |
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