View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18650_low_1 (Length: 581)

Name: NF18650_low_1
Description: NF18650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18650_low_1
NF18650_low_1
[»] chr5 (2 HSPs)
chr5 (22-569)||(7106253-7106800)
chr5 (37-569)||(7094051-7094588)
[»] chr8 (1 HSPs)
chr8 (32-180)||(33405917-33406065)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 22 - 569
Target Start/End: Original strand, 7106253 - 7106800
Alignment:
Q  22 atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7106253 atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgcgagtttttcaaaaaccagattgagtcggatacct 7106352  T
Q  122 caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttcc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7106353 caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggctcgaaagcacccttgatcatatccatttgaccggaacttttcc 7106452  T
Q  222 atgttgaaaatttgaaagttagcataactttttcgcacatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccatttcctcga 321  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7106453 atgttgaaaatttgaaagttagcataactttttcgcccatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccgtttcctcga 7106552  T
Q  322 atcaaatatcagtcgtcggattaatctgatggttgatagtgtttgtctctcggtgatcagattaattcaacaactgagttattgttggataggcaaaggg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106553 atcaaatatcagtcgtcggattaatctgatggttgatagtgttggtctctcggtgatcagattaattcaacaactgagttattgttggataggcaaaggg 7106652  T
Q  422 attcagctgccatcatacaaatattgagtatcttaaatgcattttttaagaattccaaagtaggaggtattgaatcaaaggaaatgttaccataaatact 521  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7106653 attcagctgccatcatacaaatattgagtatcttaaaagcattttttaagaattccaaagtaggaagtattgaatcaaaggaaatgttaccataaatact 7106752  T
Q  522 ttatattttcgatttcgtatgaagtaataaaaatcctatgataccttt 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106753 ttatattttcgatttcgtatgaagtaataaaaatcctatgataccttt 7106800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 37 - 569
Target Start/End: Original strand, 7094051 - 7094588
Alignment:
Q  37 tctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagcctatggag 136  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7094051 tctgcatcatcgaagaagggtaaacggtctgattttgagaagaaacttggcgagtttttcaaaaaccagattgagtcagatacctcaccagcctatggag 7094150  T
Q  137 atggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga 236  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094151 atggattcagatcgggttaccaggcggtacttaagtatgggctcaaaagtacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga 7094250  T
Q  237 aagttagcataactttttcgcacatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccatttcctcgaatcaaatatcagtcg 336  Q
    ||| |||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||         |||| |||| |||||||||||    
T  7094251 aagctagcataattttttcgcccatatgaaccaatgcctcatcatggtccggagtgttacctgtctagcc---------cctccaatcgaatatcagtcg 7094341  T
Q  337 tcggattaatctgatgg----ttgatagtgtttgtctctcggtgatcagattaattcaacaactgagttattgttggataggcaaagggattcagctgcc 432  Q
    |||||||||| ||||||    |||||||| || |||||| |||||| ||||||||||||| |||||||| |||||||||||| || | ||||||||||||    
T  7094342 tcggattaatatgatggttgattgatagtattggtctcttggtgattagattaattcaacgactgagtttttgttggataggtaatgagattcagctgcc 7094441  T
Q  433 atcat-----------acaaatattgagtatcttaaatgcattttttaagaattccaaagtaggaggtattgaatcaaaggaaatgttaccataaatact 521  Q
    |||||           ||||||||||||| ||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7094442 atcatacaaataattgacaaatattgagtgtcttaaa-gcactttctaagaattccaaaataggaggtattgaatcaaaggaaatgttaccataaatact 7094540  T
Q  522 ttatattttcgatttcgtatgaagtaataaaaatcctatgataccttt 569  Q
    || ||||||||||||| ||||||||||||||||| |||||||||||||    
T  7094541 ttttattttcgatttcttatgaagtaataaaaattctatgataccttt 7094588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 33406065 - 33405917
Alignment:
Q  32 cttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagccta 131  Q
    |||| ||| |||| || |||||||||||| |||| |||||||||||| ||||| || | ||||| ||| ||||||||||| | |||| ||||||||||||    
T  33406065 cttcctctacatcttcaaagaagggtaaacggtccgattttgagaaggaacttggtaaattttttaaacaccagattgagaccgatagctcaccagccta 33405966  T
Q  132 tggagatggattcagatcgggttaccaggcggtacttaagtatgggctt 180  Q
    |||||||||||| |||  |||| ||||||| || || ||||||||||||    
T  33405965 tggagatggatttagagagggtaaccaggcagtgctcaagtatgggctt 33405917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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