View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_high_11 (Length: 460)
Name: NF18651_high_11
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 28665470 - 28665899
Alignment:
| Q |
15 |
tatacacactcaatcctgtttctatatcactttgtagtctttactaacaaactacaaacatctctaatcacatcaagaactttatatatgttccaaatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28665470 |
tatacacactcaatcctgtttctatatcactttgtagtctttactaacaaactacaaacatctctaatcacataaagaactttatatatgttccaaatat |
28665569 |
T |
|
| Q |
115 |
gaaacaaaaactacnnnnnnnntaaatcaataatagcatcatcagccattagcgtaattatcaattgatatttaaccaatgatcaaatcaagtgtttttg |
214 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28665570 |
gagacaaaaactacaaaaaaaataaatcaataatagcatcatcagccatcagcataattatcaattgatatttaaccaatgatcaaatcaagtgtttttg |
28665669 |
T |
|
| Q |
215 |
aatttcagcagcatctctcctatagagattaactttgattccatgcttcatatacatagttaaagcaatctttggttccacagggtgattctccaccacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28665670 |
aatttcagcagcatctctcctatagagattaactttgattccatgcttcatatacatagttaaagcaatctttggttccacagggtgattctccaccacc |
28665769 |
T |
|
| Q |
315 |
ttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccgaggtccgccattaaatgcag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28665770 |
ttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccgaggtccgccattaaatgcag |
28665869 |
T |
|
| Q |
415 |
tgaatttgtacgcagattcactcataaaac |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28665870 |
tgaatttgtacgcagattcactcataaaac |
28665899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 435
Target Start/End: Complemental strand, 13888929 - 13888792
Alignment:
| Q |
298 |
ggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccgagg |
397 |
Q |
| |
|
|||||||||| || ||||| |||||||| | ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||| || |
|
|
| T |
13888929 |
ggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcgacatatttcatttgatagtatgcaaaatctttgcctaaacacaacctcgg |
13888830 |
T |
|
| Q |
398 |
tccgccattaaatgcagtgaatttgtacgcagattcac |
435 |
Q |
| |
|
||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
13888829 |
tcctccattgaaagcagtgaatttgtacgcagattcac |
13888792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 331 - 439
Target Start/End: Original strand, 13895808 - 13895916
Alignment:
| Q |
331 |
atatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccgaggtccgccattaaatgcagtgaatttgtacgcaga |
430 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
13895808 |
atatgatgttagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaacacaaccttggtcctccattaaaagctgtgaatttgtaggcaga |
13895907 |
T |
|
| Q |
431 |
ttcactcat |
439 |
Q |
| |
|
||| ||||| |
|
|
| T |
13895908 |
ttcgctcat |
13895916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 13891842 - 13891748
Alignment:
| Q |
294 |
acagggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca |
388 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||| | ||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
13891842 |
acagggtgcttctcaacaaccttaacatggtaacgaaatatgatggtagctgcaacatatttcatttgatagtatgcaaaacctttgcctaaaca |
13891748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 13892814 - 13892907
Alignment:
| Q |
331 |
atatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccgaggtccgccattaaatgcagtgaatttgta |
424 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||| |||| | ||| |||||||| |||||||||||| |
|
|
| T |
13892814 |
atatgatgctagctgcaacatatttcgtttgatagtatgcaaaatctttacctaaacacaacctcgatcctccattaaaaatagtgaatttgta |
13892907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 13890655 - 13890729
Alignment:
| Q |
350 |
atatttcatttgataatatgcaaaatctttgcctaaacataaccgaggtccgccattaaatgcagtgaatttgta |
424 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||| |||||||| ||||| |
|
|
| T |
13890655 |
atatttcatttgatagtatgcaaaatctttgcctaagcacaacctttgtcttccattaaaagcagtgaaattgta |
13890729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 393
Target Start/End: Complemental strand, 13893413 - 13893314
Alignment:
| Q |
294 |
acagggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataacc |
393 |
Q |
| |
|
|||||||||||||| || | ||| ||| |||| | ||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
13893413 |
acagggtgattctcaacaatcttaacacggtaacgaaatatgatgctagttgcaacatatttcatttgaatgtatgcaaaatctttggctaaacacaacc |
13893314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 1033765 - 1033893
Alignment:
| Q |
296 |
agggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccga |
395 |
Q |
| |
|
|||||||||||| || ||||| |||||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
1033765 |
agggtgattctcaacaaccttaacatggtaaccaaatatgatgctagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaacacaacctt |
1033864 |
T |
|
| Q |
396 |
ggtccgccattaaatgcagtgaatttgta |
424 |
Q |
| |
|
||||| |||||||| ||||| |||||||| |
|
|
| T |
1033865 |
ggtcctccattaaaagcagtaaatttgta |
1033893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University