View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18651_high_12 (Length: 431)

Name: NF18651_high_12
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18651_high_12
NF18651_high_12
[»] chr5 (15 HSPs)
chr5 (15-414)||(8644110-8644509)
chr5 (15-414)||(8636765-8637164)
chr5 (15-415)||(8677703-8678112)
chr5 (58-407)||(8535442-8535794)
chr5 (61-289)||(8528890-8529115)
chr5 (61-342)||(9074604-9074882)
chr5 (92-280)||(8641341-8641534)
chr5 (218-283)||(2904938-2905003)
chr5 (218-289)||(2856824-2856895)
chr5 (218-289)||(2874434-2874505)
chr5 (228-343)||(1600180-1600293)
chr5 (15-342)||(9003368-9003685)
chr5 (218-289)||(2844997-2845068)
chr5 (15-186)||(8548128-8548299)
chr5 (126-170)||(1600336-1600380)
[»] chr7 (2 HSPs)
chr7 (15-351)||(35779735-35780062)
chr7 (119-412)||(48361660-48361953)
[»] chr4 (1 HSPs)
chr4 (61-289)||(9443051-9443276)
[»] chr6 (2 HSPs)
chr6 (218-289)||(16716447-16716518)
chr6 (121-167)||(16716363-16716409)
[»] scaffold0627 (2 HSPs)
scaffold0627 (216-348)||(4746-4878)
scaffold0627 (121-167)||(4663-4709)
[»] chr1 (2 HSPs)
chr1 (61-183)||(5130750-5130876)
chr1 (229-291)||(26324202-26324264)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 8644110 - 8644509
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8644110 acttggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaa 8644209  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644210 ttgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactga 8644309  T
Q  215 ccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaat 314  Q
     |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644310 tcaaagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaat 8644409  T
Q  315 gtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644410 gtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaac 8644509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 8636765 - 8637164
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  8636765 acttggaacatgtggaattatttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaa 8636864  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  8636865 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactga 8636964  T
Q  215 ccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaat 314  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||    
T  8636965 ccaaagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacggaaaaaagatgtatcacaaat 8637064  T
Q  315 gtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaac 414  Q
     ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8637065 ataaagtaatccccttaattctccaatgcgaatacactcgttatgacgaaatccattattttgattttgtaacactggaggagaaggaaatgattgcaac 8637164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 415
Target Start/End: Original strand, 8677703 - 8678112
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8677703 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaa 8677802  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggact-- 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||      
T  8677803 ttgcaggaatgatataacaatatggcagcaccctcttcaaagtgttttaccggccaacataaaccataatgccgcgaatcaggtctgcccaaaggactga 8677902  T
Q  213 -------gaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgt 305  Q
           ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  8677903 caggacggaccacaatatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatcacggaaaggatatgt 8678002  T
Q  306 atcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaat 405  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8678003 atcgcaaatgtaaagtaatcctcttaattttcccatgtgaatacgcttgttacaacgaaatccattattatgattttgaaatactggaggagaaggaaat 8678102  T
Q  406 gattgcaact 415  Q
    ||||||||||    
T  8678103 gattgcaact 8678112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 58 - 407
Target Start/End: Original strand, 8535442 - 8535794
Alignment:
Q  58 ccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagt 157  Q
    |||| |||||||||||||| |||  ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  8535442 ccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagt 8535541  T
Q  158 gttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaat 257  Q
    ||||||  ||||| | ||||||||| | | | | | || | ||  || ||||| |||   |||||||||| ||||||| |||||||||||||||||||||    
T  8535542 gttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaat 8535641  T
Q  258 gccatattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgtt 356  Q
    |||||||||||||||||||||||||| ||||||| || || ||  | | ||| ||||||||||| |||||| ||||||||||||||| |||| |    ||    
T  8535642 gccatattcattcataacccacattgaaacatca-gataaaaaggtcgaatcacaaatgtaaagaaatccctttaattctcccatgctaatatgtctatt 8535740  T
Q  357 acgacgaaatccattattttgattttgaaaca---ctggaggagaaggaaatga 407  Q
    || | ||||||||||||| ||||||  |||||    ||||||||||||||||||    
T  8535741 actaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatga 8535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 61 - 289
Target Start/End: Original strand, 8528890 - 8529115
Alignment:
Q  61 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 160  Q
    ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||||||||||||    
T  8528890 tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 8528989  T
Q  161 ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgcc 260  Q
    ||| |||||| | ||||||||||| | | | | ||   |   |||||||| ||| | ||||||| || ||||||| ||||||||||||||||||||||||    
T  8528990 ttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc 8529086  T
Q  261 atattcattcataacccacattgcaacat 289  Q
    ||||||||||||||||||||||| |||||    
T  8529087 atattcattcataacccacattgaaacat 8529115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 61 - 342
Target Start/End: Complemental strand, 9074882 - 9074604
Alignment:
Q  61 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 160  Q
    ||||||||||||||||||||  ||| |||||| ||||||||| |||||| ||||||| || |||||||||||||||||||||| || |||||||||||||    
T  9074882 tgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgtt 9074783  T
Q  161 ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgcc 260  Q
    ||| ||||   ||||||||  ||| |   | |  | | | |||| ||||| ||| | |||||||||| |||||||| ||||||||||||||| |||| ||    
T  9074782 ttatcggc---cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaatacc 9074686  T
Q  261 atattcattcataacccacattgcaacatcacgaaaagaatatgta-tcgcaaatgtaaagtaatccccttaattctcccatg 342  Q
    |||||||||||||||||||| || ||||||| || || ||| |  | || ||||||||||| |||||| ||||||||||||||    
T  9074685 atattcattcataacccacactgaaacatca-gataaaaatgtccagtcacaaatgtaaagaaatccctttaattctcccatg 9074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 8641341 - 8641534
Alignment:
Q  92 cgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcga 191  Q
    |||||||||||||||||| |||||||||||||||||||||| |||  ||||| || |||||||||||| ||||||||||||||| |||||||| |    |    
T  8641341 cgggttcatagtagataa-acaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataaccccaaaa 8641439  T
Q  192 ---atcaggtctgcccaaaggactgaccaaag---tatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccaca 280  Q
       | ||||   |||||||| | ||||  |||   ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8641440 gagaccaggatagcccaaagaattgactgaagtattatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccaca 8641534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
Q  218 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattg 283  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2905003 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 2856895 - 2856824
Alignment:
Q  218 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 289  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2856895 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 2874505 - 2874434
Alignment:
Q  218 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 289  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2874505 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 1600293 - 1600180
Alignment:
Q  228 cttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgta-tcgcaaatgtaaagtaatcc 326  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| || |  || | ||| || ||||||||||| |||||    
T  1600293 cttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gata--aaaaggtagtcacaaatgtaaagaaatcc 1600197  T
Q  327 ccttaattctcccatgc 343  Q
    | |||||||||||||||    
T  1600196 ctttaattctcccatgc 1600180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 9003368 - 9003685
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    |||||||| ||||||||||| |||||| ||||  ||   ||  ||||||| | |||||||| ||||  ||||||||||||||||||||||||  | ||||    
T  9003368 acttggaatatgtggaattacttcaactaattttgattgagccccgtgaacttgaaaaactctgaatccatgtttctcgggttcatagtagactaaacaa 9003467  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactga 214  Q
    ||| | || | ||| |||||||||  ||| | |||||||||  |||||||||||||||| ||||||  |  | |  | |||||| |||||||||||| |     
T  9003468 ttgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccgg 9003567  T
Q  215 ccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaat 314  Q
    |  ||||||||||  |||||||||||||||| ||          ||||| || |||||||||||  |||||||||||   | |||  |||  || |||||    
T  9003568 cggaagtatcaatgctgtaaaccttagtccaaga----------ccatactccttcataacccaagttgcaacatcaaagagagaggatgagtcacaaat 9003657  T
Q  315 gtaaagtaatccccttaattctcccatg 342  Q
    |||||| |||||||||||||||||||||    
T  9003658 gtaaagaaatccccttaattctcccatg 9003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 2845068 - 2844997
Alignment:
Q  218 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 289  Q
    ||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2845068 aagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 8548299 - 8548128
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    |||||||| |||| |||||| |||||   |||  ||||||| ||| |||||||||||| ||||||   ||| ||| ||||| | ||||||  ||| ||||    
T  8548299 acttggaatatgttgaattacttcaaatgattgtgaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaa 8548200  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgc 186  Q
    |   | |||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||| ||| ||||    
T  8548199 tccaatgaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaacacaaagcatgacgc 8548128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 1600380 - 1600336
Alignment:
Q  126 atataacaatatggcagccccctcttcaaagtgttttaccggcca 170  Q
    |||||||||||||||||| || ||||||||||||| || ||||||    
T  1600380 atataacaatatggcagcaccttcttcaaagtgttgtatcggcca 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 35779735 - 35780062
Alignment:
Q  15 acttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaa 114  Q
    |||||||| ||||||||||| ||||||| |||  |||  ||| ||  ||||||||||||||||| |  ||| |||||| |||||| ||||||||| ||||    
T  35779735 acttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaactttgtatccatatttctcaggttcaaagtagataaaacaa 35779834  T
Q  115 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactga 214  Q
    ||||| |||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||| | |||  |||   ||| | || | |||    
T  35779835 ttgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaacataaaccataacgcggtgaaataggatagcctagagaattga 35779925  T
Q  215 ccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaat 314  Q
    || |||| ||||| ||||||||||||||||| |||||| |||||||||  ||||||||||||||||||| |||||||  |||| |||     || |||||    
T  35779926 ccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtcacaaat 35780025  T
Q  315 gtaaagtaatccccttaattctcccatgcgaatacgc 351  Q
    |||||| |||||| ||||||||||||||| |||||||    
T  35780026 gtaaagaaatccctttaattctcccatgctaatacgc 35780062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 412
Target Start/End: Complemental strand, 48361953 - 48361660
Alignment:
Q  119 aggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaa 218  Q
    ||||||||||||||||||||||||| || |||||||||||||||| ||||||   |||| |  || ||   ||| ||   |||| | ||||| ||| |      
T  48361953 aggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca---taaagctgaatgccaagaagcaaaactgctcgaaggattgaacgc 48361857  T
Q  219 agtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgta 317  Q
    |||||  || ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||| ||    ||  | |  || ||||||||    
T  48361856 agtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatca-gatgcaaaggtcgagtcacaaatgta 48361758  T
Q  318 aagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgca 412  Q
    ||| |||||| ||||||||||||||| |||| ||  ||||| | ||| ||||||||| ||||||  ||||||   |||||||||||||||||| ||||    
T  48361757 aagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgca 48361660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 61 - 289
Target Start/End: Original strand, 9443051 - 9443276
Alignment:
Q  61 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 160  Q
    ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||||||||||||    
T  9443051 tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 9443150  T
Q  161 ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgcc 260  Q
    ||| |||||| | ||||||||||| | | | | ||   |   |||||||| ||| | ||||||| || ||||||| ||||||||||||||||||||||||    
T  9443151 ttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc 9443247  T
Q  261 atattcattcataacccacattgcaacat 289  Q
    ||||||||||||||||||||||| |||||    
T  9443248 atattcattcataacccacattgaaacat 9443276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 16716447 - 16716518
Alignment:
Q  218 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 289  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16716447 aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacat 16716518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  121 gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg 167  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 4746 - 4878
Alignment:
Q  216 caaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaatg 315  Q
    |||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||     || || | ||  || ||||||    
T  4746 caaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttgagtcacaaatg 4845  T
Q  316 taaagtaatccccttaattctcccatgcgaata 348  Q
    ||||| |||||| ||||||||||||||| ||||    
T  4846 taaagaaatccctttaattctcccatgctaata 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  121 gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg 167  Q
    ||||||| ||||||||  ||||| |||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 5130750 - 5130876
Alignment:
Q  61 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgt 159  Q
    |||||||||||||||||| |   || |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  5130750 tgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 5130849  T
Q  160 tttaccggcc---aacataaaccataa 183  Q
    ||||||||||   ||||||||||||||    
T  5130850 tttaccggccaaaaacataaaccataa 5130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 26324264 - 26324202
Alignment:
Q  229 ttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatca 291  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26324264 ttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatca 26324202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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