View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_13 (Length: 420)
Name: NF18651_high_13
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 137 - 404
Target Start/End: Complemental strand, 11939495 - 11939228
Alignment:
| Q |
137 |
aaaaggtgacatgaagtttaaacttccatctcccacaacgcacaattcatcgatgcatctagaggaataatatttcgaatagcaagattcgttcttgttg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11939495 |
aaaaggtgacatgaagtttaaacttccatctcccacaacgcacaattcaccgatgcatctagagaaataatatttcgaatatcaagattcgttcttgttg |
11939396 |
T |
|
| Q |
237 |
gaacatgatcaagcaaaagtttcaaagtgaaagcaaccactcgagtaggagcttggcctttccaaaggtaacggaataccttcttctcaacttcacccca |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11939395 |
gaacatgatcaagcaaaagtttcaaagtgaaagcaaccactcgagtaggagcttggcctttccaaaggtaacgaaataccttcttctcaacttcacccca |
11939296 |
T |
|
| Q |
337 |
tctctcttcccacaccatcaatttttccaataaaatatatgttggattcacccaaagtaagccattct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11939295 |
tctctcttcccacaccatcaatttttccaataaaatatatgttgaattcacccaaagtaagccattct |
11939228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 137 - 407
Target Start/End: Original strand, 11914826 - 11915096
Alignment:
| Q |
137 |
aaaaggtgacatgaagtttaaacttccatctcccacaacgcacaattcatcgatgcatctagaggaataatatttcgaatagcaagattcgttcttgttg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
11914826 |
aaaaggtgacatgaagtttaaacttccatctcccacaacgcacaattcaccgatgcatctagaggaataatatttcgaatagcaagattcatacttgttg |
11914925 |
T |
|
| Q |
237 |
gaacatgatcaagcaaaagtttcaaagtgaaagcaaccactcgagtaggagcttggcctttccaaaggtaacggaataccttcttctcaacttcacccca |
336 |
Q |
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| T |
11914926 |
gaacatgatcaagcaaaagtttcaaagtgaaagcaaccactcaagtaggagcttggcctttccaaaggtaacgaaataccttcttctcaacttcacccca |
11915025 |
T |
|
| Q |
337 |
tctctcttcccacaccatcaatttttccaataaaatatatgttggattcacccaaagtaagccattctcct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11915026 |
tctctcttcccacaccatcaatttttccaataaaatatatgttgaattcacccaaagtaagccattctcct |
11915096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 11914631 - 11914769
Alignment:
| Q |
1 |
tgacatttgtgcgcatttcaaatcacccaaatttttccttgcctaataatccaacaacatttccacaactttccatttaaagcttcgctactacaacatt |
100 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11914631 |
tgacatttctgcgcatttcaaatcacccaaattgttccttgccaaataatccaataacatttccacaattttccatttaaagcttcgctactacaacatt |
11914730 |
T |
|
| Q |
101 |
caagtgaacaaacaaattcggaggagtgataaacataaa |
139 |
Q |
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| T |
11914731 |
caagtgaacaaacaaattcggaggagtgataaacataaa |
11914769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 11939689 - 11939551
Alignment:
| Q |
1 |
tgacatttgtgcgcatttcaaatcacccaaatttttccttgcctaataatccaacaacatttccacaactttccatttaaagcttcgctactacaacatt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11939689 |
tgacatttctgcgcatttcaaatcacccaaattgttccttgcctaataatccaataacatttccacaattttccatttaaagcttcgctactacaacatt |
11939590 |
T |
|
| Q |
101 |
caagtgaacaaacaaattcggaggagtgataaacataaa |
139 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
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| T |
11939589 |
caagtgaacaaacaaattcgaaggagtgataaacataaa |
11939551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 137 - 379
Target Start/End: Original strand, 17746398 - 17746640
Alignment:
| Q |
137 |
aaaaggtgacatgaagtttaaacttccatctcccacaacgcacaattcatcgatgcatctagaggaataatatttcgaatagcaagattcgttcttgttg |
236 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| || | |||| ||||||||| ||||| || | |||||||||||| | |||||| |||||| ||||||||| |
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| T |
17746398 |
aaaaggtgacaagaattttcaacttccatatcacgcaacacacaattcacggatgcctcaaaaggaataatattacaaatagctagattcattcttgttg |
17746497 |
T |
|
| Q |
237 |
gaacatgatcaagcaaaagtttcaaagtgaaagcaaccactcgagtaggagcttggcctttccaaaggtaacggaataccttcttctcaacttcacccca |
336 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||||||| ||||||||| || | |||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
17746498 |
gagcatgatcaagcaaaagtttccaagtgaaagcaaccactc-agtaggagcctgacatttccaaaggtaaccgaaaaccttcttctcaacttcacccca |
17746596 |
T |
|
| Q |
337 |
tctctcttcccacaccatcaa-tttttccaataaaatatatgtt |
379 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||| |
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| T |
17746597 |
tctctcttcccacaccaacaattttttccaataacatatatgtt |
17746640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 17746218 - 17746346
Alignment:
| Q |
12 |
cgcatttcaaatcacccaaatttttccttgcctaataatccaacaacatttccacaactttccatttaaagcttcgctactacaacattc-aagtgaaca |
110 |
Q |
| |
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|||||| ||||||||||||||| || |||||| |||| ||||| ||| ||||| ||| ||| |||| ||||| ||| | |||||| ||||||||| |
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| T |
17746218 |
cgcattccaaatcacccaaattgttgcttgccaaatattccaataacctttccgcaaattttaatttgttgcttcatgactccgacattccaagtgaaca |
17746317 |
T |
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| Q |
111 |
aacaaattcggaggagtgataaacataaa |
139 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
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| T |
17746318 |
aacaaatttggaggagtaataaacataaa |
17746346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 17295035 - 17295120
Alignment:
| Q |
50 |
tccaacaacatttccacaactttccatttaaagcttcgctactacaacatt-caagtgaacaaacaaattcggaggagtgataaac |
134 |
Q |
| |
|
||||| ||| ||||| ||||||| |||| | ||||| ||||| ||||||| |||||| |||||||||||| ||||||| |||||| |
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| T |
17295035 |
tccaataacttttccgcaacttttcattagatgcttcactactccaacattacaagtgcacaaacaaattcagaggagttataaac |
17295120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 8407318 - 8407200
Alignment:
| Q |
243 |
gatcaagcaaaagtttcaaagtgaaagcaaccactcgagtaggagcttggcctttccaaaggtaacggaataccttcttctcaacttcaccccatctctc |
342 |
Q |
| |
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||||||| ||||||||| ||| |||||| ||||||| | |||||| | ||||||||||| |||| || || |||||||||| ||| ||||||||| |
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| T |
8407318 |
gatcaagtaaaagtttccaagagaaagccaccactcttggaggagcctttcctttccaaagataaccaaacacattcttctcaatgtcattccatctctc |
8407219 |
T |
|
| Q |
343 |
ttcccacaccatcaatttt |
361 |
Q |
| |
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||||||||||||||||||| |
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| T |
8407218 |
ttcccacaccatcaatttt |
8407200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 21104903 - 21104976
Alignment:
| Q |
293 |
cctttccaaaggtaacggaataccttcttctcaacttcaccccatctctcttcccacaccatcaatttttccaa |
366 |
Q |
| |
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||||||||||| |||| ||||| |||||||||| ||| ||||| ||||||||||||||||||||| ||||| |
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| T |
21104903 |
cctttccaaagataacctaatacattcttctcaatgtcattccatccctcttcccacaccatcaatttctccaa |
21104976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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