View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_high_15 (Length: 404)
Name: NF18651_high_15
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 46995526 - 46995895
Alignment:
| Q |
20 |
tgtttgcctttgctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtg |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995526 |
tgtttgcctttgctttgagttttgctataaactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtg |
46995625 |
T |
|
| Q |
120 |
atgtttgaaagggaggttgataattggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaaca |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995626 |
atgtttgaaaggaaggttgataattggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaaca |
46995725 |
T |
|
| Q |
220 |
tcaacaaccttttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995726 |
tcaacaaccttttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacac |
46995825 |
T |
|
| Q |
320 |
cgtctaataattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995826 |
cgtctaataattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
46995895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 46997794 - 46998143
Alignment:
| Q |
28 |
tttgctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgatgtttga |
127 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
46997794 |
tttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttga |
46997893 |
T |
|
| Q |
128 |
aagggaggttgataattggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatcaacaac |
227 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
46997894 |
aaggaaggctgatgattggaccataaccttctggaaaccatctattgtgaataggtttatgtgaaatcggaacaggaacatgaacatca----------- |
46997982 |
T |
|
| Q |
228 |
cttttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaat |
327 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||| || ||| |
|
|
| T |
46997983 |
-ttttgaaatatctcagaaaatgagttaaagaaattccaataaccagttccatcaccaatacaatgattcatggaacaacctataaaaacactatccaat |
46998081 |
T |
|
| Q |
328 |
aattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46998082 |
aattcagtaacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
46998143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 46980714 - 46981062
Alignment:
| Q |
22 |
tttgcctttgctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |||| ||||||||| |||| |||||| | ||||| |
|
|
| T |
46980714 |
tttgcctttgctttaagttttgctatagattccactgaaaaatggaagattctctctcttaaaatgggtgtttcatatctgtgaacaaactcatggtgat |
46980813 |
T |
|
| Q |
122 |
gtttgaaagggaggttgataattggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatc |
221 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||| ||| || | | |||||||| |
|
|
| T |
46980814 |
gtttgaatggaaggttgataattggaccataaccttgtggaaaccatctcttgtggataggttgatgtgaaatggga--agcagcaggaacatca----- |
46980906 |
T |
|
| Q |
222 |
aacaaccttttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccg |
321 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||| |||||||||| || | || |||||||||||||| ||||||||||| |
|
|
| T |
46980907 |
-------ttttgaaatatctcagaaaatgtgttgaagaaattccaataagctgttccatcacaaagacaatgattcatggaacaaccaatgaaaacacca |
46980999 |
T |
|
| Q |
322 |
tctaataattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgct |
384 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
46981000 |
tctactaattcagtgacttgaatagacaacaaagacatggtatgaccatcatggttgactgct |
46981062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 46974725 - 46975075
Alignment:
| Q |
22 |
tttgcctttgctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgat |
121 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||| | || ||||||||| |||| |||||| ||||||| |
|
|
| T |
46974725 |
tttgcctttgctttcagtttcattatagactcagctgaaaaatggaagattctctctcttaaaatggatgtttcatatctgtgaacaaactcctcgtgat |
46974824 |
T |
|
| Q |
122 |
gtttgaaagggaggttgataattggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatc |
221 |
Q |
| |
|
||||||| || ||||||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||| |||||| ||| ||||| |||| |
|
|
| T |
46974825 |
gtttgaatggaaggttgataatcggaccataaccttgtggaaaccatctattgtggataggttgatgtgaaatcggaacaagaacatgaatatca----- |
46974919 |
T |
|
| Q |
222 |
aacaaccttttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccg |
321 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |||| |||||||| | | || ||||||||||||||||| |||||||| |
|
|
| T |
46974920 |
-------ttttgaaatatctcagaaaatgagttaaagaaattccaataaccagtcccatcacctatacaatgattcatggaacaacctataaaaacacca |
46975012 |
T |
|
| Q |
322 |
tctaataattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgct |
384 |
Q |
| |
|
|| ||||||||||| |||||||| | || ||||||||||| || ||||||||| |||||||| |
|
|
| T |
46975013 |
tccaataattcagttacttgaatagttaataaagacatggtatgaccatcatggctgactgct |
46975075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 145 - 389
Target Start/End: Original strand, 47001603 - 47001835
Alignment:
| Q |
145 |
ggaccatagccttcaggaaaccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatcaacaaccttttgaaatatctcag |
244 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
47001603 |
ggaccataaccttctggaaaccatcttttgtgaataggtttatgtgaaatcggaacaggaacatgaacatca------------ttttgaaatatctccg |
47001690 |
T |
|
| Q |
245 |
aaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaataattcagtgacttgaat |
344 |
Q |
| |
|
||| ||| || ||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
47001691 |
aaaatgtgttgaagaaattccaataagctgttccatcaccaatacaatgattcatggaacaacctatgaaaacaccatccaataattcagtgacttgaat |
47001790 |
T |
|
| Q |
345 |
ggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
389 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
47001791 |
agacaacaaagacatggtgtgaccatcatggttaactgctctgtg |
47001835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 47001462 - 47001588
Alignment:
| Q |
32 |
ctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgatgtttgaaagg |
131 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47001462 |
ctttaagtttcgctatagactctgctgaaaaatggaatatcctctctctcaaagtaggtgcttgatatctgtgaataaactcgtcgtgatgtttgaaagg |
47001561 |
T |
|
| Q |
132 |
gaggttgataattggaccatagccttc |
158 |
Q |
| |
|
||||||||| |||||||||| ||||| |
|
|
| T |
47001562 |
aaggttgatagttggaccataaccttc |
47001588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 46951480 - 46951633
Alignment:
| Q |
231 |
ttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaataat |
330 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| | ||| ||||| |||||||||||||||||||| |||| || |
|
|
| T |
46951480 |
ttgaaatatttcagaccatgtattaaagaaattccaataagaagttccatcaccaatatagtgattcatagaacaacctatgaaaacaccatctactagc |
46951579 |
T |
|
| Q |
331 |
tcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgct |
384 |
Q |
| |
|
||||||||||| ||||| ||||| | ||||||||| || || ||||||| |||| |
|
|
| T |
46951580 |
tcagtgacttggatggataacaacggcatggtgtgaccgtcgtggttgattgct |
46951633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 386
Target Start/End: Original strand, 46955837 - 46955972
Alignment:
| Q |
251 |
tattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaataattcagtgacttgaatggacaa |
350 |
Q |
| |
|
|||| |||||||||||| ||| ||| |||||||||| | ||||||||||||||||||||||||||||| || |||||| |||||||||||||| | |
|
|
| T |
46955837 |
tattgaagaaattccaaaaagaagtcccatcaccaatacaatggttcatggaacaacctatgaaaacaccatcccctaattccgtgacttgaatggatag |
46955936 |
T |
|
| Q |
351 |
caaagacatggtgtgtccatcatggttgactgctct |
386 |
Q |
| |
|
||| | ||||||||| |||||||| |||| |||||| |
|
|
| T |
46955937 |
caacggcatggtgtgaccatcatgattgattgctct |
46955972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 46951304 - 46951431
Alignment:
| Q |
40 |
tttgctatagactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgatgtttgaaagggaggttga |
139 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||| | |||| |||||| ||| |||| |||||| ||||||||||| || || |||| |
|
|
| T |
46951304 |
tttgcaatagactctgctgtaaaatggaagaatctctctctcagcttgggtggttcatacctagttataatctcgtcatgatgtttgaatggaagattga |
46951403 |
T |
|
| Q |
140 |
taattggaccatagccttcaggaaacca |
167 |
Q |
| |
|
| | ||||||||| ||||| |||||||| |
|
|
| T |
46951404 |
tcagtggaccataaccttctggaaacca |
46951431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 46958673 - 46958826
Alignment:
| Q |
231 |
ttgaaatatctcagaaagtgtattaaagaaattccaataagcagttccatcaccaacagcgtggttcatggaacaacctatgaaaacaccgtctaataat |
330 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||| ||| || |||||||||| | || |||| ||||||||||||||||||||| || | || |
|
|
| T |
46958673 |
ttgaaatatctcagaccatatattaaaaaaattccagaaagaggtaccatcaccaatacaatgattcagggaacaacctatgaaaacaccatccactagc |
46958772 |
T |
|
| Q |
331 |
tcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgct |
384 |
Q |
| |
|
|| ||||||||||| || ||||| | ||||||||| || || ||||||| |||| |
|
|
| T |
46958773 |
tctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgct |
46958826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University