View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_17 (Length: 385)
Name: NF18651_high_17
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 3609244 - 3608890
Alignment:
| Q |
14 |
ttcactgcgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaaggaaat |
113 |
Q |
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| T |
3609244 |
ttcactgtgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaaggaaat |
3609145 |
T |
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| Q |
114 |
tcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgtttttagtgccatgtttccatcctctcagaacaac |
213 |
Q |
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| T |
3609144 |
tcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgcttttagtgccatgtttccatcctctcagaacaac |
3609045 |
T |
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| Q |
214 |
aacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaatttccacatattt |
313 |
Q |
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| T |
3609044 |
aacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaatttccacatattt |
3608945 |
T |
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| Q |
314 |
tccatgtcttctttaattggtaaattttccaattatgagtttgagggggatatta |
368 |
Q |
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| T |
3608944 |
tccatgtcttctttaattagtaaattttccaattatgagtttgagggggatatta |
3608890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 39219773 - 39219705
Alignment:
| Q |
39 |
ttgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaa |
107 |
Q |
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| T |
39219773 |
ttgatccaccaagatttatcacggcctattccattctctgccatttatggaagatttcaaaaatggaaa |
39219705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 15551251 - 15551339
Alignment:
| Q |
181 |
tttagtgccatgtttccatcctctcag---aacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagag |
266 |
Q |
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| T |
15551251 |
tttagtgctatgtttccgtcctctcagcagaacagcaacttggattcaaaattaagaattaaataagaaatagtggcttcctaggagag |
15551339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 15584900 - 15584992
Alignment:
| Q |
205 |
cagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaa |
300 |
Q |
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| T |
15584900 |
cagaacaaaaacttggatccaaatttaagggttaaagaagaa---gtggcttccttggagagataccacattttgctgccaatgtcacggagacaa |
15584992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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