View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18651_high_19 (Length: 363)

Name: NF18651_high_19
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18651_high_19
NF18651_high_19
[»] chr4 (14 HSPs)
chr4 (15-345)||(934735-935053)
chr4 (26-147)||(27450484-27450605)
chr4 (15-147)||(31458878-31459010)
chr4 (17-109)||(40933198-40933290)
chr4 (38-147)||(45205171-45205280)
chr4 (17-121)||(21106858-21106964)
chr4 (20-149)||(34233338-34233467)
chr4 (15-111)||(45094462-45094558)
chr4 (38-110)||(49739117-49739189)
chr4 (17-147)||(31960116-31960246)
chr4 (17-121)||(25967569-25967671)
chr4 (17-101)||(12494646-12494730)
chr4 (17-73)||(25257881-25257937)
chr4 (60-108)||(29398708-29398756)
[»] chr2 (6 HSPs)
chr2 (17-145)||(38429736-38429864)
chr2 (17-147)||(41763343-41763473)
chr2 (17-147)||(41197530-41197660)
chr2 (45-146)||(11992436-11992537)
chr2 (17-146)||(36183302-36183431)
chr2 (17-90)||(9579003-9579075)
[»] chr7 (11 HSPs)
chr7 (45-151)||(25579401-25579507)
chr7 (17-145)||(39811809-39811937)
chr7 (17-147)||(38606855-38606985)
chr7 (23-147)||(32630445-32630569)
chr7 (17-147)||(34869270-34869400)
chr7 (17-153)||(19262733-19262867)
chr7 (18-89)||(28542187-28542257)
chr7 (38-145)||(43281528-43281635)
chr7 (38-146)||(31005074-31005182)
chr7 (39-111)||(36514529-36514601)
chr7 (68-108)||(41626866-41626906)
[»] chr5 (6 HSPs)
chr5 (17-149)||(7678329-7678460)
chr5 (17-108)||(21093665-21093756)
chr5 (40-101)||(5848401-5848462)
chr5 (17-137)||(1287891-1288011)
chr5 (38-135)||(16347701-16347798)
chr5 (78-146)||(41110104-41110172)
[»] chr1 (8 HSPs)
chr1 (17-145)||(15085786-15085914)
chr1 (17-147)||(696119-696249)
chr1 (17-137)||(9592594-9592714)
chr1 (17-151)||(4379851-4379985)
chr1 (17-146)||(1210596-1210725)
chr1 (16-65)||(6641064-6641113)
chr1 (38-147)||(32083068-32083177)
chr1 (17-101)||(30202432-30202516)
[»] chr6 (8 HSPs)
chr6 (17-147)||(608009-608139)
chr6 (17-147)||(9706626-9706756)
chr6 (38-147)||(5258473-5258582)
chr6 (38-138)||(30031115-30031215)
chr6 (78-164)||(21870497-21870583)
chr6 (38-147)||(5631668-5631777)
chr6 (17-65)||(9568592-9568640)
chr6 (17-65)||(33998306-33998354)
[»] chr3 (9 HSPs)
chr3 (59-147)||(5168678-5168766)
chr3 (17-96)||(2341016-2341095)
chr3 (17-137)||(51448011-51448131)
chr3 (98-169)||(44395253-44395324)
chr3 (38-147)||(25191229-25191338)
chr3 (84-149)||(43308414-43308479)
chr3 (55-151)||(46367725-46367821)
chr3 (38-146)||(47542035-47542142)
chr3 (17-113)||(50621662-50621758)
[»] chr8 (6 HSPs)
chr8 (17-149)||(30783342-30783473)
chr8 (15-167)||(39760724-39760876)
chr8 (17-139)||(15215573-15215695)
chr8 (15-73)||(29520584-29520642)
chr8 (38-147)||(42854327-42854436)
chr8 (59-147)||(18752217-18752305)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 934735 - 935053
Alignment:
Q  15 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  934735 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgc 934834  T
Q  115 ctaacaccccgtcccatacaacattgccggtcttacaaccgtatgataaatttttgggtaaatttttcccttcagattgagtgggacttttgtatcatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  934835 ctaacaccccgtcccatacaacattgccggtcttacaaccgtatgataaa------------tttttcccttcagattgagtgggacttttgtatcatat 934922  T
Q  215 aaaacaaatatctcattgtctacattgaagttaattacaagttacaattcaaccttacaattaaattaaaagttcaaacaaataataccaatatcacaaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  934923 aaaacaaatatctcattgtctacattgaagttaattacaagttacaattcaaccttacaattacattaaaagttcaaacaaataataccaatatcacaaa 935022  T
Q  315 tcacaatattctaagttaatcatgattacaa 345  Q
    |||||||||||||||||||||||||||||||    
T  935023 tcacaatattctaagttaatcatgattacaa 935053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 27450484 - 27450605
Alignment:
Q  26 attctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccg 125  Q
    ||||||||||  |||||| |||||| || ||| ||||||| ||||||| || ||||||||| ||||||||| |||| | |||| |||||| ||||| |||    
T  27450484 attctatcatgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaactgcccaacactccg 27450583  T
Q  126 tcccatacaacattgccggtct 147  Q
    | ||||||||||||| ||||||    
T  27450584 taccatacaacattgtcggtct 27450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 31459010 - 31458878
Alignment:
Q  15 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgc 114  Q
    ||||||| ||||| |||||||  |||||| |||||| || ||||||||||| |||||||    ||||||||| |||| | || |||| |||||| |||||    
T  31459010 tatcattcctaatcctatcatgtctagtcttaccactcaaccaacgcaacatcctcatctgtgctacacttactttattttcgtgttggttcttaactgc 31458911  T
Q  115 ctaacaccccgtcccatacaacattgccggtct 147  Q
    | ||||| |||| ||||| ||||| ||||||||    
T  31458910 ccaacactccgtaccataaaacatcgccggtct 31458878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 40933198 - 40933290
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttcttt 109  Q
    |||||||||||||||||||   | ||| |||||||||  |||||||||| |||||||  | ||||||||||||||||||| |||| |||||||    
T  40933198 tcatttctaattctatcatgtattgtcttaccacacattcaacgcaacatcctcatctacgctacacttattttactctcgtgttggttcttt 40933290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 45205171 - 45205280
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||||| ||||| ||||||| || |||| |||| || | |||| |||| |||||| |||||| ||||| |||| ||||||||||    
T  45205171 ctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgcccaacactccgtaccatacaaca 45205270  T
Q  138 ttgccggtct 147  Q
    | ||||||||    
T  45205271 tcgccggtct 45205280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 21106964 - 21106858
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactaca--cttattttactctcatgttagttctttactgc 114  Q
    ||||||||||||||||||   |||||| ||||||||| | ||| ||||| ||||||| ||||||||  ||||||||| | ||||||| |||||| || ||    
T  21106964 tcatttctaattctatcacgtctagtcttaccacacatcgaacccaacatcctcatcaccactacactcttattttattgtcatgttggttcttaaccgc 21106865  T
Q  115 ctaacac 121  Q
    | |||||    
T  21106864 ccaacac 21106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 34233338 - 34233467
Alignment:
Q  20 tttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaac 119  Q
    |||||||| |||||| | |||||| || |||||| ||||| ||||| | ||||| ||||||||||||| ||| || | |||| |||||| |||||| |||    
T  34233338 tttctaatcctatcacatctagtcttatcacacatccaacacaacatcatcatctccactacacttatcttattcccgtgttggttcttcactgcccaac 34233437  T
Q  120 accccgtcccatacaacattgccggtctta 149  Q
     | | || ||||||| ||| || |||||||    
T  34233438 tctctgttccatacagcatcgctggtctta 34233467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 45094462 - 45094558
Alignment:
Q  15 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttac 111  Q
    ||||||||||||| ||||| |  |||||  ||| ||||| ||||| ||||| ||||||| ||||||  ||||||||| || |||||| |||||||||    
T  45094462 tatcatttctaatactatcttgtctagtattactacacatccaacacaacatcctcatctccactatgcttattttaatcgcatgttggttctttac 45094558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 49739117 - 49739189
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttcttta 110  Q
    |||||| ||||||||| | ||||||||| || |||  ||||||| |||||||||||||| |||| ||||||||    
T  49739117 ctagtcttaccacacatctaacgcaacatccccatttccactacgcttattttactctcttgttggttcttta 49739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 31960116 - 31960246
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| |  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || |||     
T  31960116 tcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgccc 31960215  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| |||| ||||||||||  ||||||||    
T  31960216 aacactccgtaccatacaacaacgccggtct 31960246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 25967569 - 25967671
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||||||||| ||| |||  |||||| ||||||||| ||| ||||||| ||||| | ||||||| ||||  ||| |||| |||| ||| |||||||||     
T  25967569 tcatttctaatcctaccatgtctagtcttaccacacatccatcgcaacatcctcacctccactacgctta--ttattctcttgttggttttttactgccc 25967666  T
Q  117 aacac 121  Q
    |||||    
T  25967667 aacac 25967671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 12494730 - 12494646
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgtt 101  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||    
T  12494730 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgtt 12494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 25257881 - 25257937
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatc 73  Q
    |||||||||||||||||||  |||||| ||| ||||| ||||| |||||| ||||||    
T  25257881 tcatttctaattctatcatgtctagtcttactacacatccaacacaacaagctcatc 25257937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 29398756 - 29398708
Alignment:
Q  60 gcaacaacctcatccccactacacttattttactctcatgttagttctt 108  Q
    |||||| ||||||| || |||||||||||||| ||||||||| ||||||    
T  29398756 gcaacatcctcatctccgctacacttattttattctcatgttggttctt 29398708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 38429864 - 38429736
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| || ||||||||| | ||||||| |||| |||||| || |||     
T  38429864 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttggttcttaaccgccc 38429765  T
Q  117 aacaccccgtcccatacaacattgccggt 145  Q
    ||||| |||| ||||||||||||||||||    
T  38429764 aacactccgtaccatacaacattgccggt 38429736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 41763343 - 41763473
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| |  |||||| |||||| || ||| ||||||| ||||||| || ||||||||| ||||||||| |||| |||||| || |||     
T  41763343 tcattcctaatcctatcttgtctagtcttaccactcatccatcgcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgccc 41763442  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| | || ||||||||||||||||||||    
T  41763443 aacactctgtaccatacaacattgccggtct 41763473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 41197530 - 41197660
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || | | ||||||| ||||||| || ||||||||| ||||||||| |||| | |||| || |||     
T  41197530 tcattcctaatcctatcatgtctagtcttaccactcatctagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccgccc 41197629  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    |||||   || |||||||||||||| |||||    
T  41197630 aacactttgtaccatacaacattgctggtct 41197660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 11992436 - 11992537
Alignment:
Q  45 taccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccgg 144  Q
    |||||| || ||| ||||||| ||||||| || ||||||||| ||||||||| ||||   |||| || ||| | ||| |||| |||||||||||||||||    
T  11992436 taccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttgactcttaaccgcccatcactccgtaccatacaacattgccgg 11992535  T
Q  145 tc 146  Q
    ||    
T  11992536 tc 11992537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 36183431 - 36183302
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || |||     
T  36183431 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgccc 36183332  T
Q  117 aacaccccgtcccatacaacattgccggtc 146  Q
    ||||| |||| ||||||||||  |||||||    
T  36183331 aacactccgtaccatacaacaacgccggtc 36183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 9579003 - 9579075
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttatttt 90  Q
    |||||| ||||||||||||| ||| || ||||||||| ||||||||||| | | ||| || |||||||||||||    
T  9579003 tcatttttaattctatcatatctattcttaccacacatccaacgcaacatctttatctcc-ctacacttatttt 9579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 25579401 - 25579507
Alignment:
Q  45 taccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccgg 144  Q
    ||||||||| ||||||||||| ||||||| || |||| ||||||||| |||| |||| |||||| || ||| ||||  |||| ||||||||||| |||||    
T  25579401 taccacacatccaacgcaacatcctcatctcctctacgcttattttattctcgtgttggttcttaaccgcccaacattccgttccatacaacatcgccgg 25579500  T
Q  145 tcttaca 151  Q
    |||||||    
T  25579501 tcttaca 25579507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 39811937 - 39811809
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||||||||| ||||||   |||||| ||||||||| |||| |||||| ||||||  || |||| ||| ||||| |||||||  ||||||||||||||     
T  39811937 tcatttctaatcctatcacgtctagtcttaccacacatccaaagcaacatcctcatatccgctacgcttgttttattctcatgccagttctttactgccc 39811838  T
Q  117 aacaccccgtcccatacaacattgccggt 145  Q
    ||||   ||||||||||||||| ||||||    
T  39811837 aacaattcgtcccatacaacatcgccggt 39811809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 38606985 - 38606855
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||| |||||||   ||||| || ||||||||| ||||||||| |||| | |||| || |||     
T  38606985 tcattcctaatcctatcatgtctagtcttaccactcatccagcgcaacattatcatctccgctacacttactttactctcgtgttggctcttaaccgccc 38606886  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| |||| ||||||||||||||||||||    
T  38606885 aacactccgtaccatacaacattgccggtct 38606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 32630569 - 32630445
Alignment:
Q  23 ctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacacc 122  Q
    ||||| |||||||  |||||| |||||| || ||| | ||||| ||||||| || ||||||||| ||||||||| |||| |||||| || ||| | |||     
T  32630569 ctaatcctatcatgtctagtcttaccactcatccagctcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccagcact 32630470  T
Q  123 ccgtcccatacaacattgccggtct 147  Q
    |||| ||||||||||||| ||||||    
T  32630469 ccgtaccatacaacattgtcggtct 32630445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 34869400 - 34869270
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| | |||||||||| || | |||||||||   |||| || |||     
T  34869400 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctactacacttacttgattctcatgttgactcttaaccgccc 34869301  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| |||| ||||||||||  ||||||||    
T  34869300 aacactccgtaccatacaacaacgccggtct 34869270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 19262733 - 19262867
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    |||||||||| ||||||||  |||||  ||||||| | |  ||| |||| ||||||| |||||||  ||| ||||||    |||| ||||||||||| |     
T  19262733 tcatttctaactctatcatgtctagtattaccacatatcacacgtaacatcctcatctccactacgattaatttactag--tgttggttctttactgacc 19262830  T
Q  117 aacaccccgtcccatacaacattgccggtcttacaac 153  Q
    ||||| | |||||||||||||||||||||||||||||    
T  19262831 aacactctgtcccatacaacattgccggtcttacaac 19262867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 28542187 - 28542257
Alignment:
Q  18 catttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattt 89  Q
    ||||||||||||||||  || ||||| ||||||||| ||||||||||| ||||||| || ||||||||||||    
T  28542187 catttctaattctatcccac-tagtcttaccacacatccaacgcaacaccctcatctccgctacacttattt 28542257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 43281635 - 43281528
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||| ||||||| |||||||||| ||||||||| ||||||||   ||| | |||| || ||| ||||| | || ||||||||||    
T  43281635 ctagtcttaccactcatccagcgcaacatcctcatccccgctacacttactttactcttgcgttggctcttaaccgcccaacactctgtaccatacaaca 43281536  T
Q  138 ttgccggt 145  Q
    ||||||||    
T  43281535 ttgccggt 43281528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 31005182 - 31005074
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || ||||||||| |||| ||||||||||    
T  31005182 ctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcctaacactccgtaccatacaaca 31005083  T
Q  138 ttgccggtc 146  Q
      |||||||    
T  31005082 acgccggtc 31005074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 36514529 - 36514601
Alignment:
Q  39 tagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttac 111  Q
    ||||| ||||||||| ||||||||||| ||||||| |  ||||||||| |||| | || |||| |||||||||    
T  36514529 tagtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggttctttac 36514601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 41626906 - 41626866
Alignment:
Q  68 ctcatccccactacacttattttactctcatgttagttctt 108  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  41626906 ctcatctccgctacactaattttactctcatgttagttctt 41626866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 7678460 - 7678329
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||||||||| ||||| || |||||| | ||||| | ||||||||||| ||||||| ||||||||||| || || |||| |||| |||||| || |||     
T  7678460 tcatttctaatcctatcctatctagtcttgccacagatccaacgcaacatcctcatctccactacacttgttctattctcgtgttggttcttcac-gccc 7678362  T
Q  117 aacaccccgtcccatacaacattgccggtctta 149  Q
    ||||| |||| ||||||||||| || |||||||    
T  7678361 aacactccgttccatacaacatcgctggtctta 7678329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 21093756 - 21093665
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctt 108  Q
    ||||||||||||| |||| | |||||| |||||||||  |||||||||| ||||||  ||||||||||||||||| |||| |||| ||||||    
T  21093756 tcatttctaattccatcacatctagtcttaccacacatacaacgcaacatcctcatatccactacacttattttattctcgtgttggttctt 21093665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 5848401 - 5848462
Alignment:
Q  40 agtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgtt 101  Q
    |||| ||||||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||    
T  5848401 agtcttaccacacatccaatgcaacatcctcatctctgctacacttattttactctcatgtt 5848462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 1287891 - 1288011
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || |||     
T  1287891 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgccc 1287990  T
Q  117 aacaccccgtcccatacaaca 137  Q
    ||||| |||| ||||||||||    
T  1287991 aacactccgtaccatacaaca 1288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 16347701 - 16347798
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaa 135  Q
    |||||| |||||| || ||||||||||| ||||||| || ||||||||| || |||||| |||| | |||| || ||  ||||| |||| ||||||||    
T  16347701 ctagtcttaccactcatccaacgcaacatcctcatctccgctacacttacttaactctcgtgttggctcttaaccgctcaacactccgtaccatacaa 16347798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 41110104 - 41110172
Alignment:
Q  78 ctacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtc 146  Q
    |||| ||||||||| |||| |||  ||||| ||||||| ||||| |||| ||||||||||| |||||||    
T  41110104 ctacgcttattttattctcgtgtctgttctctactgcccaacactccgttccatacaacatagccggtc 41110172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 15085914 - 15085786
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| || |||||| |||||| |  ||| ||||||| ||||||| || ||||||||| ||||||||| |||| | |||| || |||     
T  15085914 tcattcctaatcctatcctatctagtcttaccactcgtccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccgccc 15085815  T
Q  117 aacaccccgtcccatacaacattgccggt 145  Q
    ||||| |||| ||||||||||||||||||    
T  15085814 aacactccgtaccatacaacattgccggt 15085786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 696249 - 696119
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| |  |||||| |||||| || ||| ||||||| ||||||| || ||||||||| ||||||||| |||| | |||| ||  ||     
T  696249 tcattcctaatcctatcctgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccaccc 696150  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| |||| ||||||||||||||||||||    
T  696149 aacactccgtaccatacaacattgccggtct 696119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 9592714 - 9592594
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||  ||||| || |||     
T  9592714 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgattcttaaccgccc 9592615  T
Q  117 aacaccccgtcccatacaaca 137  Q
    ||||| |||| ||||||||||    
T  9592614 aacactccgtaccatacaaca 9592594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 4379985 - 4379851
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    |||||||||||  |||| |  |||||| ||||||||| ||||| ||||| ||||||| |  |||  |||  |||| | || |||| ||||||||||||||    
T  4379985 tcatttctaatcatatcttttctagtcttaccacacatccaacacaacatcctcatctcagctaagctttatttattttcgtgttggttctttactgcct 4379886  T
Q  117 aacaccccgtcccatacaacattgccggtcttaca 151  Q
    ||||| | ||||| |||||||| ||| ||||||||    
T  4379885 aacactctgtcccgtacaacatcgccagtcttaca 4379851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 1210725 - 1210596
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| |  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || |||     
T  1210725 tcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgccc 1210626  T
Q  117 aacaccccgtcccatacaacattgccggtc 146  Q
    ||||| |||| ||||||||||  |||||||    
T  1210625 aacactccgtaccatacaacaacgccggtc 1210596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6641113 - 6641064
Alignment:
Q  16 atcatttctaattctatcatacctagtcataccacacagccaacgcaaca 65  Q
    |||||||||||||||||   | |||||||||||||||| |||||||||||    
T  6641113 atcatttctaattctatgccatctagtcataccacacatccaacgcaaca 6641064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 32083068 - 32083177
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||| ||||||| ||||||| || |||||| || ||||||||| ||||   |||| || ||| ||||| | || ||||||||||    
T  32083068 ctagtcttaccactcatccagcgcaacatcctcatctccgctacacatactttactctcgtgttgactcttaaccgcccaacactctgtaccatacaaca 32083167  T
Q  138 ttgccggtct 147  Q
    ||| ||||||    
T  32083168 ttgtcggtct 32083177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 30202432 - 30202516
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgtt 101  Q
    ||||| ||||| |||||||  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||    
T  30202432 tcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgtt 30202516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 608139 - 608009
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| || |||||| |||||| || |||||| |||| ||||||| || ||||||||| |||| |||| |||| | |||| || |||     
T  608139 tcattcctaatcctatcctatctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctcttaaccgccc 608040  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    ||||| |||| | ||||||||||||||||||    
T  608039 aacactccgtacaatacaacattgccggtct 608009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9706756 - 9706626
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| |||||||  |||||| |||||| || |||  |||||| ||||||| || ||||||||| ||||||||| ||||   |||| ||  |||    
T  9706756 tcattcctaatcctatcatgtctagtcttaccactcatccagtgcaacatcctcatctccgctacacttactttactctcgtgttgactcttaaccacct 9706657  T
Q  117 aacaccccgtcccatacaacattgccggtct 147  Q
    |||||  ||| ||||||||||||||||||||    
T  9706656 aacacttcgtaccatacaacattgccggtct 9706626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 5258473 - 5258582
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || |||||||||||  |||| | || ||||||||| ||| ||||| |||| | ||||  | ||| ||||| |||| ||||||||||    
T  5258473 ctagtcttaccactcatccaacgcaacattctcacctccgctacacttactttgctctcgtgttggctcttcgccgcccaacactccgtaccatacaaca 5258572  T
Q  138 ttgccggtct 147  Q
    ||||||||||    
T  5258573 ttgccggtct 5258582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 30031215 - 30031115
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||||| ||||||||||||| || ||||||| | || | ||||||||| | |||| || ||| ||||| |||| ||||||||||    
T  30031215 ctagtcttaccactcatccaacacaacaacctcatctccgctacactaacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaaca 30031116  T
Q  138 t 138  Q
    |    
T  30031115 t 30031115  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 21870497 - 21870583
Alignment:
Q  78 ctacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtcttacaaccgtatgataaa 164  Q
    |||| |||||||||||||| |||| ||||||||| | | |||||   ||||||||||||||| ||||| |||||   ||||||||||    
T  21870497 ctacgcttattttactctcgtgtttgttctttaccgaccaacactttgtcccatacaacattaccggttttacagttgtatgataaa 21870583  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 5631777 - 5631668
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||||| ||||| |||||||  | ||||||||| |||||||||  ||| | |||| || ||| ||||| || | ||||||||||    
T  5631777 ctagtcttaccactcatccaacacaacatcctcatcttcgctacacttactttactctcgcgttggctcttaaccgcccaacactccataccatacaaca 5631678  T
Q  138 ttgccggtct 147  Q
    ||| ||||||    
T  5631677 ttgtcggtct 5631668  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9568640 - 9568592
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaaca 65  Q
    |||||| ||||||||||||  |||||| ||||||||| |||||||||||    
T  9568640 tcatttataattctatcatgtctagtcttaccacacatccaacgcaaca 9568592  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33998306 - 33998354
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaaca 65  Q
    ||||||||||| |||||| | |||||| ||||||||| |||||||||||    
T  33998306 tcatttctaatcctatcacatctagtcttaccacacatccaacgcaaca 33998354  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 5168766 - 5168678
Alignment:
Q  59 cgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtct 147  Q
    ||||||| ||||||| || ||||||||| |||||||||||||| | |||| || ||| | ||| |||| ||||||||||||||||||||    
T  5168766 cgcaacatcctcatctccgctacacttactttactctcatgttggctcttaaccgcccagcactccgtaccatacaacattgccggtct 5168678  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 2341016 - 2341095
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctc 96  Q
    |||||||||||||||||||  |||||| ||||||||| |||| |||||| ||||||| ||||||  ||||||||| ||||    
T  2341016 tcatttctaattctatcatgtctagtcttaccacacatccaatgcaacatcctcatctccactatccttattttattctc 2341095  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 51448011 - 51448131
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||| ||||| ||||| |  |||||| |||||| || ||||||||||| ||||||| |  ||||||||| || | |||||||||   |||| || ||||    
T  51448011 tcattcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttagttgattctcatgttgactcttaaccgcct 51448110  T
Q  117 aacaccccgtcccatacaaca 137  Q
    ||||| |||| ||||||||||    
T  51448111 aacactccgtaccatacaaca 51448131  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 44395324 - 44395253
Alignment:
Q  98 tgttagttctttactgcctaacaccccgtcccatacaacattgccggtcttacaaccgtatgataaattttt 169  Q
    |||| ||||||||| ||| |||||   ||||||||||| ||||||||||||||| | |||||||||| ||||    
T  44395324 tgttggttctttaccgcccaacactatgtcccatacaaaattgccggtcttacatctgtatgataaaatttt 44395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 25191338 - 25191229
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||| ||||||| ||||||| |  ||||||||| ||||||||| ||||   |||| || ||| ||||| | || ||||||||||    
T  25191338 ctagtcttaccactcatccagcgcaacatcctcatctctgctacacttactttactctcgtgttgactcttaacagcccaacactctgtaccatacaaca 25191239  T
Q  138 ttgccggtct 147  Q
    || |||||||    
T  25191238 tttccggtct 25191229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 43308479 - 43308414
Alignment:
Q  84 ttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtctta 149  Q
    |||||||| |||| |||| ||||||||| ||| ||||| || |||||||||||||  |||||||||    
T  43308479 ttattttattctcgtgttggttctttaccgcccaacactccatcccatacaacatcaccggtctta 43308414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 46367725 - 46367821
Alignment:
Q  55 ccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtcttaca 151  Q
    ||||| ||||| ||||||| | ||||||||||||||| |||| |||| |||| |||| | | ||||| || || ||||||||| ||| ||| |||||    
T  46367725 ccaacacaacatcctcatctctactacacttattttattctcgtgttggttcattaccgtccaacactccttcacatacaacactgcaggtattaca 46367821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 47542035 - 47542142
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| |||||| || ||||||||||| ||||||| |  |||||||| | ||| |||||||||   |||| |||||| ||||| |||| ||||||||||    
T  47542035 ctagtcttaccactcatccaacgcaacatcctcatctctgctacactt-tcttattctcatgttgactcttaactgcccaacactccgtaccatacaaca 47542133  T
Q  138 ttgccggtc 146  Q
      |||||||    
T  47542134 acgccggtc 47542142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 50621662 - 50621758
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactg 113  Q
    ||||||||||| ||||||| | ||||| ||||||| | | || ||||||  |||||| || ||||||||||||||  ||| | ||||||||| ||||    
T  50621662 tcatttctaatcctatcattcatagtcttaccacatatcaaatgcaacattctcatctccgctacacttattttatcctcgtattagttcttgactg 50621758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 30783342 - 30783473
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||||||||| ||||| || |||||| | ||||| | ||||||||| | ||||||| |||||||||||||| || | || |||| |||||| || |||     
T  30783342 tcatttctaatcctatcctatctagtcttgccacagatccaacgcaagatcctcatctccactacacttattctattatcgtgttggttcttcac-gccc 30783440  T
Q  117 aacaccccgtcccatacaacattgccggtctta 149  Q
    |||||   || ||||||||||| || |||||||    
T  30783441 aacactttgttccatacaacatcgctggtctta 30783473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 39760724 - 39760876
Alignment:
Q  15 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgc 114  Q
    ||||||||||| | ||||| |  ||| || ||||||||| ||||| ||||| ||||||| |  ||||||||  |||  |||| | || ||||||||| |     
T  39760724 tatcatttctactcctatcttgtctaatcctaccacacatccaacacaacatcctcatctctgctacacttcattttttctcgtattggttctttaccgt 39760823  T
Q  115 ctaacaccccgtcccatacaacattgccggtcttacaaccgtatgataaattt 167  Q
    | |||||||||||||||||||| |  |  |||||||| | |||||||||||||    
T  39760824 ccaacaccccgtcccatacaacgtcactagtcttacagctgtatgataaattt 39760876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 15215573 - 15215695
Alignment:
Q  17 tcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcct 116  Q
    ||||||||||| ||||| |   ||||| |||||| || ||| | ||||| ||||||| || || |||||| ||||||||| |||| | |||| || |||     
T  15215573 tcatttctaatcctatcctgtatagtcttaccactcatccagcacaacatcctcatctccgcttcacttactttactctcgtgttggctcttaaccgccc 15215672  T
Q  117 aacaccccgtcccatacaacatt 139  Q
    ||||| |||| ||||||||||||    
T  15215673 aacactccgtaccatacaacatt 15215695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 29520642 - 29520584
Alignment:
Q  15 tatcatttctaattctatcatacctagtcataccacacagccaacgcaacaacctcatc 73  Q
    ||||||||||||| |||||  | |||||| ||||||||| ||||||||||| |||||||    
T  29520642 tatcatttctaatcctatcccatctagtcttaccacacatccaacgcaacatcctcatc 29520584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 42854327 - 42854436
Alignment:
Q  38 ctagtcataccacacagccaacgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaaca 137  Q
    |||||| ||||||  | ||| ||||||| | ||||| || ||||||| | ||||||||| |||| | |||| || ||| ||||| |||| ||||||||||    
T  42854327 ctagtcttaccacttatccagcgcaacatcgtcatctccgctacactaactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaaca 42854426  T
Q  138 ttgccggtct 147  Q
    ||| ||||||    
T  42854427 ttgtcggtct 42854436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 18752217 - 18752305
Alignment:
Q  59 cgcaacaacctcatccccactacacttattttactctcatgttagttctttactgcctaacaccccgtcccatacaacattgccggtct 147  Q
    |||||||  |||||| || ||||||||| ||||||||| |||| | |||| || | | | ||| |||| ||||||||||||||||||||    
T  18752217 cgcaacattctcatctccgctacacttactttactctcgtgttggctcttaaccgtccagcactccgtaccatacaacattgccggtct 18752305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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