View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_20 (Length: 353)
Name: NF18651_high_20
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39652026 - 39651933
Alignment:
| Q |
1 |
tcaagacaatcacacaccatcaagcaaagtgcaa----ctactagtcagcgcagattaaattaccaacaagtcttctttcccctcgatctttccc |
91 |
Q |
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| T |
39652026 |
tcaagacaatcacacaccatcaagcaaagtgcaagcaactactagtcagcgcagattaaattaccaacaagtcttc-ttcccctcgatctttccc |
39651933 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 39651764 - 39651693
Alignment:
| Q |
261 |
ccctttgttgggtttgaaactttgaagcttccgacaagagttgtttgatctacgcctcatggcttctccggta |
333 |
Q |
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| T |
39651764 |
ccctttgttgggtttgaaactttgaagcttccgacaagagttg-ttgatctacgcctcatggcttctccggta |
39651693 |
T |
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