View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_29 (Length: 303)
Name: NF18651_high_29
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 3609355 - 3609648
Alignment:
| Q |
1 |
ttatattgatcaaaagacagtgaatgagtatatgagatgctctatatatagtgtgtttgtgagacataaac----taactgacctttataagaaactcta |
96 |
Q |
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| T |
3609355 |
ttatattgatcaaaagacgatgaatgagtatatgagatgctctatatatagtgtgtttgtgagacataaacaaactaactgacctttataagaaactcta |
3609454 |
T |
|
| Q |
97 |
actagctaactaaattttaacaaactccatatatctaataatatgttacatatcgaataaaaaagtgaatggtgaaccctttataaatgagataatctat |
196 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3609455 |
actagctaactaaattttaacaaactctatatatctaataatatgttccatatcgaataaaaaagtgaatggtgaaccctttataagtgagataacctat |
3609554 |
T |
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| Q |
197 |
aaacttaatgtgttaaggttttgggttaattaaaatgtgtgnnnnnnncacttgtattataattattcaaagtccgatagtagcctcacaggttc |
291 |
Q |
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| T |
3609555 |
aaacttaatgtgttaaggttttgagttaattaaaatgtgtg-ttttttcacttgtattataattgttcaaagcccgatagtagcctcaaaggttc |
3609648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 11400649 - 11400718
Alignment:
| Q |
156 |
aaaaagtgaatggtgaaccctttataaatgagataatctataaacttaatgtgttaaggttttgggttaa |
225 |
Q |
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| T |
11400649 |
aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatgtcttaaggttttgagttaa |
11400718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 34451711 - 34451763
Alignment:
| Q |
84 |
ataagaaactctaactagctaactaaattttaacaaactccatatatctaata |
136 |
Q |
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|||| |||||||||||| | |||||||||||||| ||||| |||| ||||||| |
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| T |
34451711 |
ataacaaactctaactaaccaactaaattttaactaactctatatttctaata |
34451763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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