View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_32 (Length: 278)
Name: NF18651_high_32
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 34675437 - 34675302
Alignment:
| Q |
115 |
gaatgagtttggtttatgcctacattctttt-ttgtctattctatcctttttaatgatatttcttgagataccataaatgataggtgttagtgtcggggt |
213 |
Q |
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| T |
34675437 |
gaatgagtttggtttatgcctacattcttttgttgtctattctatcttttttaatgatatttcttgagataccgtaaatgataggtgttagtgtcggggt |
34675338 |
T |
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| Q |
214 |
gcaaacatagttgaaatattatttccaccaaaagat |
249 |
Q |
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| T |
34675337 |
gcaaacatagttgaaatattatttccactaaaagat |
34675302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 34675302 - 34675415
Alignment:
| Q |
7 |
atcttttggtggaaataatatttcaactatgtttgcaccccgacactaacacctatcatttatggtatctcaagaaatatcattaaaaaggatagaatag |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34675302 |
atcttttagtggaaataatatttcaactatgtttgcaccccgacactaacacctatcatttacggtatctcaagaaatatcattaaaaaagatagaatag |
34675401 |
T |
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| Q |
107 |
acaa-aaaagaatg |
119 |
Q |
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| T |
34675402 |
acaacaaaagaatg |
34675415 |
T |
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