View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_33 (Length: 278)
Name: NF18651_high_33
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 49977250 - 49976997
Alignment:
| Q |
1 |
aatttgagggaacaaaatctacattcatagaccttctcgtcttttctatcatcatcatcttcgccgttttccttttccttataacctgtaactgttgtaa |
100 |
Q |
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| T |
49977250 |
aatttgagggaacaaaatctacattcatagaccttctcgtcttttctatcatcatcatcttcgccgttttccttttccttataacctgtaactgttgtaa |
49977151 |
T |
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| Q |
101 |
ccaaatatccaatttaagcaactttgatgagacccttcctttaccttaattaaataaagtaaaccaacttcattcccaataacccaaaatcatcattgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977150 |
ccaaatatccaatttaagcaactttgatgagacccttcctttaccttaattaaataaagtaaaccaacttcattcccaataacccaaaatcatcattgca |
49977051 |
T |
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| Q |
201 |
ttg----------catttatttatttcttatcactttaccgactacccctttca |
244 |
Q |
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| T |
49977050 |
ttgcattgcattgcatttatttatttcttatcactttaccaactacccctttca |
49976997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 49953525 - 49953557
Alignment:
| Q |
4 |
ttgagggaacaaaatctacattcatagaccttc |
36 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
49953525 |
ttgagggaacagaatctacattcatagaccttc |
49953557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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