View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_high_36 (Length: 271)
Name: NF18651_high_36
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 7540021 - 7539761
Alignment:
| Q |
1 |
aagaagtgtacccttatctgtgattcccattcttccaaaaattcttggactatatnnnnnnntaccctcaactccacaaatattttgaaatatatgaaca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7540021 |
aagaagtgtacccttatcagtgattcccattcttccaaaaattcttggactatataaaaaaataccctcaactccacaaatattttgaaatatatgaaca |
7539922 |
T |
|
| Q |
101 |
ccaatagctgcaataagtatcctatatacatgtggtgaaggtttataaaacatttcttttaaagctcctccgccactacgagttttctttgaaacatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7539921 |
ccaatagctgcaataagtatcctatatacatgtggtgaaggtttataaaacatttcttttaaagctcctccaccactacgagttttctttgaaacatgaa |
7539822 |
T |
|
| Q |
201 |
caatgttttgggtgcaattttcatcaattccaacagcattttttatttccttcatcctttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7539821 |
caatgttttgggtgcaattttcatcaattccaacagcattttttatttccttcatcctttg |
7539761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University