View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_43 (Length: 243)
Name: NF18651_high_43
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39572056 - 39571832
Alignment:
| Q |
1 |
cctacaacaattcaaactcaaaccaacctttttcatattcttaccttcaatttcctctcttttttctagctaaaacacataactagacaaattcctaact |
100 |
Q |
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| T |
39572056 |
cctacaacaattcaaactcaaaccaacctttttcatattcttaccttcaatttcctctcttttttctagctaaaacacataactagacaaattcctaact |
39571957 |
T |
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| Q |
101 |
agctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattca |
200 |
Q |
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| T |
39571956 |
agctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattca |
39571857 |
T |
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| Q |
201 |
tcaaatccacgaagaacttatttgc |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
39571856 |
tcaagtccacgaagaacttatttgc |
39571832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 39569190 - 39569057
Alignment:
| Q |
50 |
atttcctctct-tttttctagctaaaacacataactagacaaattcctaactagctatactctcaataactcaatggatccatctcatataactgcttat |
148 |
Q |
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| T |
39569190 |
atttcctctctctttttctagctacaacacataattagacaaattcctaatt-gctaaactctcaatttttcaatggatccattccatatacctgcttat |
39569092 |
T |
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| Q |
149 |
gtaaatttcagctgcgaactgagaataatacaagc |
183 |
Q |
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| T |
39569091 |
gcaaacttcagctgtgaactaagaataatacaagc |
39569057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 39584910 - 39585091
Alignment:
| Q |
35 |
atattcttaccttcaatttcctctcttttttctagctaaaacacataactagacaaat--tcctaactagctatactctcaataactcaatggatccatc |
132 |
Q |
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| T |
39584910 |
atattcttagctttaatttcctctcctttt-ctaactgcaacacataactagacacatattcctaacta----tactctcaaattttcaatggatccatc |
39585004 |
T |
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| Q |
133 |
tcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaatccacgaagaactt |
219 |
Q |
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| T |
39585005 |
ccatataccagcttatgcaaacttcagctgtgaactgagaataatacaagccagaaacactgaattcatcaaatccacgaaaaactt |
39585091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 39566506 - 39566354
Alignment:
| Q |
73 |
aaacacataactagacaaattcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgaga |
172 |
Q |
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| T |
39566506 |
aaacatataactagacaaattcctatttagctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgaga |
39566407 |
T |
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| Q |
173 |
ataatacaagctcgtaacatcgaattcatcaaatccacgaagaacttatttgc |
225 |
Q |
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|| || ||||| || || || |||| | ||||||| ||||| ||||||||||| |
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| T |
39566406 |
atcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgc |
39566354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 39574800 - 39574903
Alignment:
| Q |
122 |
atggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaatccacgaagaacttat |
221 |
Q |
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|||||||||||| |||| || ||||||| || ||||| || ||| ||||| ||||||||||||| ||||||||||||||||| |||||||| ||||| | |
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| T |
39574800 |
atggatccatcttatatgtcttcttatgttaacttcagttgtgaattgagattaatacaagctcgaaacatcgaattcatcaagtccacgaaaaacttgt |
39574899 |
T |
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| Q |
222 |
ttgc |
225 |
Q |
| |
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|||| |
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| T |
39574900 |
ttgc |
39574903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 39581339 - 39581459
Alignment:
| Q |
106 |
tactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaa |
205 |
Q |
| |
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|||||||||| ||||||||||||| || ||| ||||||||| ||| ||||| | ||||||||||| || ||||| || || || |||| | ||||| |
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| T |
39581339 |
tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaa |
39581438 |
T |
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| Q |
206 |
tccacgaagaacttatttgct |
226 |
Q |
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||||| || |||||||||||| |
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| T |
39581439 |
tccacaaaaaacttatttgct |
39581459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 39561751 - 39561666
Alignment:
| Q |
119 |
tcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaa |
204 |
Q |
| |
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|||||||||||||| | | | |||| |||| ||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| |
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| T |
39561751 |
tcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaa |
39561666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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