View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18651_high_45 (Length: 239)

Name: NF18651_high_45
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18651_high_45
NF18651_high_45
[»] chr3 (3 HSPs)
chr3 (10-239)||(39572263-39572492)
chr3 (10-239)||(39562073-39562304)
chr3 (24-239)||(39566752-39566968)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 39572492 - 39572263
Alignment:
Q  10 acatcatcacaactagtgagtttaattagataagaatgccaacagagggttctagttttattgatggtgtagtggaagccagcattcaagggttttagtt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39572492 acattatcacaactagtgagtttaattagataagaatgccaactgagggttctagttttattgatggtgtagtggaagccagcattcaagggttttagtt 39572393  T
Q  110 agtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagactaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39572392 agtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcattaagatactgtggattcataacccaataccaaatcagactaa 39572293  T
Q  210 caataggaaaattggaaaatctagcctttc 239  Q
    ||||||||||||||||||||||||||||||    
T  39572292 caataggaaaattggaaaatctagcctttc 39572263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 39562304 - 39562073
Alignment:
Q  10 acatcatcacaactagtgagtttaattagataagaatgccaacagagggttctagttttattgatgg-tgt-agtggaagccagcattcaagggttttag 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  | | || |||||||||||||   |||||    
T  39562304 acattatcacaactagtgagtttaattagataagaatgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttag 39562205  T
Q  108 ttagtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagact 207  Q
    | ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  39562204 tcagtacaaaaaccttgcttattctaatgttacttttggggtcccagttatggattgcattaagatactgtggattcataaaccaataccatatcagact 39562105  T
Q  208 aacaataggaaaattggaaaatctagcctttc 239  Q
    ||||| ||  ||||||||||||| ||||||||    
T  39562104 aacaagagccaaattggaaaatccagcctttc 39562073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 39566968 - 39566752
Alignment:
Q  24 agtgagtttaattagataagaatgccaacagagggttctagttttattgatgg-tgt-agtggaagccagcattcaagggttttagttagtacaaaaacc 121  Q
    |||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| ||| | | ||  ||||||||||||  ||||||| ||||||||||||    
T  39566968 agtgagtttaatcagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaacc 39566870  T
Q  122 ttggttattctaatattacttttggtgtcccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagactaacaataggaaaat 221  Q
    ||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||  ||||    
T  39566869 ttgcttattctaatgttacttttggggtcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaat 39566770  T
Q  222 tggaaaatctagcctttc 239  Q
    ||||||||||||||||||    
T  39566769 tggaaaatctagcctttc 39566752  T

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