View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_46 (Length: 239)
Name: NF18651_high_46
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49977338 - 49977559
Alignment:
| Q |
1 |
ttctactttcttcttctcaaaagaaaatattccatttcaataaaacctttgatataataataattttattatttttcggtttgatttgatttgtgattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
49977338 |
ttctactttcttcttctcaaaagaaaatattccatttcaataaaacctttgatataataatatttttattatttttcggtttgatttgatttgttattgt |
49977437 |
T |
|
| Q |
101 |
tgtgtggttggtttgggtgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgccc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977438 |
tgtgtggttggtttgggtgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgccc |
49977537 |
T |
|
| Q |
201 |
ttcacctagggtatgcacttct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49977538 |
ttcacctagggtatgcacttct |
49977559 |
T |
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